RNA–Protein interactions for RNA: ENST00000496622.1

SSBP1-213, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 1 (best)

Gene SSBP1, Length 2,620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-213ENST00000496622 POLA1P09884 1462 aaPredicted RBP9.41□□□□□ -0.9
SSBP1-213ENST00000496622 CLIP1P30622 1438 aa9.41□□□□□ -0.9
SSBP1-213ENST00000496622 TOPBP1Q92547 1522 aa9.41□□□□□ -0.9
SSBP1-213ENST00000496622 P3H3Q8IVL6 736 aa9.41□□□□□ -0.9
SSBP1-213ENST00000496622 RTN4Q9NQC3 1192 aaKnown RBP9.41□□□□□ -0.9
SSBP1-213ENST00000496622 ADGRL1O94910 1474 aa9.4□□□□□ -0.9
SSBP1-213ENST00000496622 PRXQ9BXM0 1461 aa9.4□□□□□ -0.9
SSBP1-213ENST00000496622 PKD2Q13563 968 aa9.4□□□□□ -0.9
SSBP1-213ENST00000496622 GALR2O43603 387 aaPredicted RBP9.39□□□□□ -0.91
SSBP1-213ENST00000496622 MAP3K13O43283 966 aa9.39□□□□□ -0.91
SSBP1-213ENST00000496622 PAK3O75914 559 aaPredicted RBP9.39□□□□□ -0.91
SSBP1-213ENST00000496622 CARMIL1Q5VZK9 1371 aa9.39□□□□□ -0.91
SSBP1-213ENST00000496622 IFFO2Q5TF58 517 aa9.38□□□□□ -0.91
SSBP1-213ENST00000496622 IFT140Q96RY7 1462 aa9.38□□□□□ -0.91
SSBP1-213ENST00000496622 HRCP23327 699 aa9.38□□□□□ -0.91
SSBP1-213ENST00000496622 SP7Q8TDD2 431 aaPredicted RBP9.38□□□□□ -0.91
SSBP1-213ENST00000496622 TRPC6Q9Y210 931 aa9.38□□□□□ -0.91
SSBP1-213ENST00000496622 WDR97A6NE52 1622 aa9.38□□□□□ -0.91
SSBP1-213ENST00000496622 KIF21BO75037 1637 aa9.36□□□□□ -0.91
SSBP1-213ENST00000496622 GABBR2O75899 941 aa9.35□□□□□ -0.91
SSBP1-213ENST00000496622 ZNF579Q8NAF0 562 aaKnown RBP9.35□□□□□ -0.91
SSBP1-213ENST00000496622 KIF12Q96FN5 646 aa9.35□□□□□ -0.91
SSBP1-213ENST00000496622 MS4A3Q96HJ5 214 aa9.35□□□□□ -0.91
SSBP1-213ENST00000496622 DNMBPQ6XZF7 1577 aa9.35□□□□□ -0.91
SSBP1-213ENST00000496622 RNF25Q96BH1 459 aaPredicted RBP9.35□□□□□ -0.91
SSBP1-213ENST00000496622 PCDHB8Q9UN66 801 aa9.34□□□□□ -0.91
SSBP1-213ENST00000496622 PCDHB13Q9Y5F0 798 aa9.34□□□□□ -0.91
SSBP1-213ENST00000496622 KDM6BO15054 1643 aa9.33□□□□□ -0.92
SSBP1-213ENST00000496622 IFNL1Q8IU54 200 aa9.33□□□□□ -0.92
SSBP1-213ENST00000496622 ATP1B4Q9UN42 357 aaPredicted RBP9.33□□□□□ -0.92
SSBP1-213ENST00000496622 AQRO60306 1485 aaKnown RBP eCLIP9.32□□□□□ -0.92
SSBP1-213ENST00000496622 KIF13AQ9H1H9 1805 aa9.32□□□□□ -0.92
SSBP1-213ENST00000496622 KANK4Q5T7N3 995 aaPredicted RBP9.32□□□□□ -0.92
SSBP1-213ENST00000496622 ABCA10Q8WWZ4 1543 aa9.31□□□□□ -0.92
SSBP1-213ENST00000496622 CERKQ8TCT0 537 aa9.3□□□□□ -0.92
SSBP1-213ENST00000496622 RGL2O15211 777 aa9.3□□□□□ -0.92
SSBP1-213ENST00000496622 GSE1Q14687 1217 aa9.3□□□□□ -0.92
SSBP1-213ENST00000496622 VPS8Q8N3P4 1428 aa9.29□□□□□ -0.92
SSBP1-213ENST00000496622 ECM2O94769 699 aaPredicted RBP9.29□□□□□ -0.92
SSBP1-213ENST00000496622 ERICH3Q5RHP9 1530 aa9.28□□□□□ -0.92
SSBP1-213ENST00000496622 TARBP1Q13395 1621 aaKnown RBP9.28□□□□□ -0.92
SSBP1-213ENST00000496622 EIF4G3O43432 1585 aaKnown RBP9.28□□□□□ -0.92
SSBP1-213ENST00000496622 ZNF608Q9ULD9 1512 aaPredicted RBP9.28□□□□□ -0.92
SSBP1-213ENST00000496622 GAPVD1Q14C86 1478 aa9.27□□□□□ -0.92
SSBP1-213ENST00000496622 ARHGAP35Q9NRY4 1499 aa9.27□□□□□ -0.93
SSBP1-213ENST00000496622 ARID3CA6NKF2 412 aa9.24□□□□□ -0.93
SSBP1-213ENST00000496622 POTEIP0CG38 1075 aa9.24□□□□□ -0.93
SSBP1-213ENST00000496622 CHD1O14646 1710 aa9.24□□□□□ -0.93
SSBP1-213ENST00000496622 FHOD3Q2V2M9 1422 aa9.23□□□□□ -0.93
SSBP1-213ENST00000496622 ITGAEP38570 1179 aa9.21□□□□□ -0.93
SSBP1-213ENST00000496622 CCER1Q8TC90 406 aaPredicted RBP9.2□□□□□ -0.94
SSBP1-213ENST00000496622 BMP2KQ9NSY1 1161 aaPredicted RBP9.18□□□□□ -0.94
SSBP1-213ENST00000496622 MAGI1Q96QZ7 1491 aaPredicted RBP9.17□□□□□ -0.94
SSBP1-213ENST00000496622 CLASP1Q7Z460 1538 aa9.17□□□□□ -0.94
SSBP1-213ENST00000496622 ABCA5Q8WWZ7 1642 aa9.17□□□□□ -0.94
SSBP1-213ENST00000496622 PODXL2Q9NZ53 605 aa9.17□□□□□ -0.94
SSBP1-213ENST00000496622 CENPBP07199 599 aaPredicted RBP9.17□□□□□ -0.94
SSBP1-213ENST00000496622 AMER1Q5JTC6 1135 aaPredicted RBP9.17□□□□□ -0.94
SSBP1-213ENST00000496622 CHMP7Q8WUX9 453 aaPredicted RBP9.17□□□□□ -0.94
SSBP1-213ENST00000496622 DCBLD2Q96PD2 775 aa9.16□□□□□ -0.94
SSBP1-213ENST00000496622 TTLL13PA6NNM8 815 aa9.16□□□□□ -0.94
SSBP1-213ENST00000496622 CHRM1P11229 460 aaPredicted RBP9.16□□□□□ -0.94
SSBP1-213ENST00000496622 ATN1P54259 1190 aaPredicted RBP9.16□□□□□ -0.94
SSBP1-213ENST00000496622 TMEM106CQ9BVX2 250 aa9.15□□□□□ -0.95
SSBP1-213ENST00000496622 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.14□□□□□ -0.95
SSBP1-213ENST00000496622 RIOK3O14730 519 aaKnown RBP9.14□□□□□ -0.95
SSBP1-213ENST00000496622 ZFP91Q96JP5 570 aaPredicted RBP9.14□□□□□ -0.95
SSBP1-213ENST00000496622 GRIN2BQ13224 1484 aa9.14□□□□□ -0.95
SSBP1-213ENST00000496622 SNAPC4Q5SXM2 1469 aa9.13□□□□□ -0.95
SSBP1-213ENST00000496622 FHAD1B1AJZ9 1412 aa9.13□□□□□ -0.95
SSBP1-213ENST00000496622 PSEN1P49768 467 aa9.13□□□□□ -0.95
SSBP1-213ENST00000496622 ZNF467Q7Z7K2 595 aaPredicted RBP9.12□□□□□ -0.95
SSBP1-213ENST00000496622 TRIM35Q9UPQ4 493 aa9.12□□□□□ -0.95
SSBP1-213ENST00000496622 PBRM1Q86U86 1689 aa9.12□□□□□ -0.95
SSBP1-213ENST00000496622 ATMINO43313 823 aaPredicted RBP9.11□□□□□ -0.95
SSBP1-213ENST00000496622 UBE2Q2Q8WVN8 375 aa9.11□□□□□ -0.95
SSBP1-213ENST00000496622 CUL7Q14999 1698 aa9.11□□□□□ -0.95
SSBP1-213ENST00000496622 FAM50AQ14320 339 aaKnown RBP9.1□□□□□ -0.95
SSBP1-213ENST00000496622 SGIP1Q9BQI5 828 aa9.1□□□□□ -0.95
SSBP1-213ENST00000496622 TIMELESSQ9UNS1 1208 aa9.1□□□□□ -0.95
SSBP1-213ENST00000496622 STK25O00506 426 aa9.09□□□□□ -0.95
SSBP1-213ENST00000496622 BCL11BQ9C0K0 894 aaPredicted RBP9.09□□□□□ -0.95
SSBP1-213ENST00000496622 IQSEC2Q5JU85 1478 aa9.09□□□□□ -0.95
SSBP1-213ENST00000496622 ASTLQ6HA08 431 aaPredicted RBP9.09□□□□□ -0.95
SSBP1-213ENST00000496622 CABP2Q9NPB3 220 aa9.09□□□□□ -0.95
SSBP1-213ENST00000496622 PHLDB1Q86UU1 1377 aa9.08□□□□□ -0.96
SSBP1-213ENST00000496622 ARXQ96QS3 562 aa9.08□□□□□ -0.96
SSBP1-213ENST00000496622 CHGAP10645 457 aaKnown RBP9.08□□□□□ -0.96
SSBP1-213ENST00000496622 PDAP1Q13442 181 aaKnown RBP9.08□□□□□ -0.96
SSBP1-213ENST00000496622 PCF11O94913 1555 aaKnown RBP9.07□□□□□ -0.96
SSBP1-213ENST00000496622 ABCC10Q5T3U5 1492 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 ADAMTS12P58397 1594 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 TIE1P35590 1138 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 JPH4Q96JJ6 628 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 PCDH10Q9P2E7 1040 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 STK24Q9Y6E0 443 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 LRRC9Q6ZRR7 1453 aa9.06□□□□□ -0.96
SSBP1-213ENST00000496622 CCNB3Q8WWL7 1395 aa9.05□□□□□ -0.96
SSBP1-213ENST00000496622 GRIN2AQ12879 1464 aa9.05□□□□□ -0.96
SSBP1-213ENST00000496622 MED1Q15648 1581 aaPredicted RBP9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms