RNA–Protein interactions for RNA: ENST00000487565.5

GARNL3-218, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-218	ENST00000487565	DNMBP	Q6XZF7	1577 aa		12.98	□□□□□ -0.33
GARNL3-218	ENST00000487565	THOC2	Q8NI27	1593 aa	Known RBP	12.98	□□□□□ -0.33
GARNL3-218	ENST00000487565	POTEJ	P0CG39	1038 aa		12.97	□□□□□ -0.33
GARNL3-218	ENST00000487565	URB2	Q14146	1524 aa	Known RBP	12.97	□□□□□ -0.33
GARNL3-218	ENST00000487565	SYNJ1	O43426	1573 aa		12.96	□□□□□ -0.33
GARNL3-218	ENST00000487565	OTUD5	Q96G74	571 aa		12.96	□□□□□ -0.33
GARNL3-218	ENST00000487565	CUX1	P39880	1505 aa		12.96	□□□□□ -0.33
GARNL3-218	ENST00000487565	WDR62	O43379	1518 aa		12.95	□□□□□ -0.34
GARNL3-218	ENST00000487565	MAMSTR	Q6ZN01	415 aa		12.95	□□□□□ -0.34
GARNL3-218	ENST00000487565	TOP2B	Q02880	1626 aa		12.95	□□□□□ -0.34
GARNL3-218	ENST00000487565	BIVM-ERCC5	R4GMW8	1640 aa		12.95	□□□□□ -0.34
GARNL3-218	ENST00000487565	TOPBP1	Q92547	1522 aa		12.94	□□□□□ -0.34
GARNL3-218	ENST00000487565	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	12.94	□□□□□ -0.34
GARNL3-218	ENST00000487565	SCUBE2	Q9NQ36	999 aa		12.92	□□□□□ -0.34
GARNL3-218	ENST00000487565	EFCAB3	Q8N7B9	438 aa		12.9	□□□□□ -0.34
GARNL3-218	ENST00000487565	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.89	□□□□□ -0.35
GARNL3-218	ENST00000487565	FGD5	Q6ZNL6	1462 aa		12.89	□□□□□ -0.35
GARNL3-218	ENST00000487565	PDCD7	Q8N8D1	485 aa	Known RBP	12.88	□□□□□ -0.35
GARNL3-218	ENST00000487565	STK25	O00506	426 aa		12.87	□□□□□ -0.35
GARNL3-218	ENST00000487565	STK24	Q9Y6E0	443 aa		12.87	□□□□□ -0.35
GARNL3-218	ENST00000487565	POLA1	P09884	1462 aa	Predicted RBP	12.86	□□□□□ -0.35
GARNL3-218	ENST00000487565	ILDR1	Q86SU0	546 aa	Predicted RBP	12.82	□□□□□ -0.36
GARNL3-218	ENST00000487565	CUX2	O14529	1486 aa		12.81	□□□□□ -0.36
GARNL3-218	ENST00000487565	L3MBTL3	Q96JM7	780 aa	Predicted RBP	12.81	□□□□□ -0.36
GARNL3-218	ENST00000487565	IFT140	Q96RY7	1462 aa		12.8	□□□□□ -0.36
GARNL3-218	ENST00000487565	SOX12	O15370	315 aa		12.8	□□□□□ -0.36
GARNL3-218	ENST00000487565	DPY19L2	Q6NUT2	758 aa		12.8	□□□□□ -0.36
GARNL3-218	ENST00000487565	SOGA1	O94964	1423 aa		12.78	□□□□□ -0.36
GARNL3-218	ENST00000487565	RAD54L2	Q9Y4B4	1467 aa		12.78	□□□□□ -0.36
GARNL3-218	ENST00000487565	ABCA10	Q8WWZ4	1543 aa		12.77	□□□□□ -0.37
GARNL3-218	ENST00000487565	WDR97	A6NE52	1622 aa		12.77	□□□□□ -0.37
GARNL3-218	ENST00000487565	TARBP1	Q13395	1621 aa	Known RBP	12.77	□□□□□ -0.37
GARNL3-218	ENST00000487565	PHF8	Q9UPP1	1060 aa		12.76	□□□□□ -0.37
GARNL3-218	ENST00000487565		G3V3G9	751 aa		12.75	□□□□□ -0.37
GARNL3-218	ENST00000487565	C3orf67	Q6ZVT6	689 aa		12.74	□□□□□ -0.37
GARNL3-218	ENST00000487565	SLAIN1	Q8ND83	568 aa		12.74	□□□□□ -0.37
GARNL3-218	ENST00000487565	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	12.74	□□□□□ -0.37
GARNL3-218	ENST00000487565	NLRP6	P59044	892 aa		12.72	□□□□□ -0.37
GARNL3-218	ENST00000487565	BOLA1	Q9Y3E2	137 aa		12.72	□□□□□ -0.37
GARNL3-218	ENST00000487565	KIF27	Q86VH2	1401 aa		12.71	□□□□□ -0.37
GARNL3-218	ENST00000487565	CHGA	P10645	457 aa	Known RBP	12.71	□□□□□ -0.37
GARNL3-218	ENST00000487565	ABCA5	Q8WWZ7	1642 aa		12.7	□□□□□ -0.38
GARNL3-218	ENST00000487565	EIF4G3	O43432	1585 aa	Known RBP	12.7	□□□□□ -0.38
GARNL3-218	ENST00000487565	HS6ST3	Q8IZP7	471 aa		12.7	□□□□□ -0.38
GARNL3-218	ENST00000487565	MS4A4A	Q96JQ5	239 aa		12.7	□□□□□ -0.38
GARNL3-218	ENST00000487565	EEA1	Q15075	1411 aa		12.7	□□□□□ -0.38
GARNL3-218	ENST00000487565	ZNF608	Q9ULD9	1512 aa	Predicted RBP	12.68	□□□□□ -0.38
GARNL3-218	ENST00000487565	MFRP	Q9BY79	579 aa		12.68	□□□□□ -0.38
GARNL3-218	ENST00000487565	TDRD9	Q8NDG6	1382 aa	Known RBP	12.67	□□□□□ -0.38
GARNL3-218	ENST00000487565	GAPVD1	Q14C86	1478 aa		12.66	□□□□□ -0.38
GARNL3-218	ENST00000487565	FBXO22	Q8NEZ5	403 aa		12.66	□□□□□ -0.38
GARNL3-218	ENST00000487565	AMER1	Q5JTC6	1135 aa	Predicted RBP	12.65	□□□□□ -0.38
GARNL3-218	ENST00000487565	AQR	O60306	1485 aa	Known RBP eCLIP	12.64	□□□□□ -0.39
GARNL3-218	ENST00000487565	PBRM1	Q86U86	1689 aa		12.64	□□□□□ -0.39
GARNL3-218	ENST00000487565	RUSC2	Q8N2Y8	1516 aa		12.63	□□□□□ -0.39
GARNL3-218	ENST00000487565	GRIN2B	Q13224	1484 aa		12.63	□□□□□ -0.39
GARNL3-218	ENST00000487565	ERICH3	Q5RHP9	1530 aa		12.62	□□□□□ -0.39
GARNL3-218	ENST00000487565	MICALL2	Q8IY33	904 aa		12.61	□□□□□ -0.39
GARNL3-218	ENST00000487565	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	12.61	□□□□□ -0.39
GARNL3-218	ENST00000487565	FAM9A	Q8IZU1	332 aa	Predicted RBP	12.6	□□□□□ -0.39
GARNL3-218	ENST00000487565	CUL7	Q14999	1698 aa		12.6	□□□□□ -0.39
GARNL3-218	ENST00000487565	FAM163A	Q96GL9	167 aa	Predicted RBP	12.59	□□□□□ -0.39
GARNL3-218	ENST00000487565	RTN4	Q9NQC3	1192 aa	Known RBP	12.59	□□□□□ -0.39
GARNL3-218	ENST00000487565	ADAMTS12	P58397	1594 aa		12.59	□□□□□ -0.39
GARNL3-218	ENST00000487565	SNAPC4	Q5SXM2	1469 aa		12.59	□□□□□ -0.39
GARNL3-218	ENST00000487565	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.58	□□□□□ -0.4
GARNL3-218	ENST00000487565	IGF1R	P08069	1367 aa		12.56	□□□□□ -0.4
GARNL3-218	ENST00000487565	KIF21B	O75037	1637 aa		12.55	□□□□□ -0.4
GARNL3-218	ENST00000487565	FHAD1	B1AJZ9	1412 aa		12.54	□□□□□ -0.4
GARNL3-218	ENST00000487565	PRX	Q9BXM0	1461 aa		12.53	□□□□□ -0.4
GARNL3-218	ENST00000487565	DNAJC5	Q9H3Z4	198 aa		12.53	□□□□□ -0.4
GARNL3-218	ENST00000487565	SNPH	O15079	494 aa		12.52	□□□□□ -0.41
GARNL3-218	ENST00000487565	CARMIL1	Q5VZK9	1371 aa		12.52	□□□□□ -0.41
GARNL3-218	ENST00000487565	SYNJ2	O15056	1496 aa		12.52	□□□□□ -0.41
GARNL3-218	ENST00000487565	NKX1-1	Q15270	411 aa	Predicted RBP	12.51	□□□□□ -0.41
GARNL3-218	ENST00000487565	GOLGA3	Q08378	1498 aa		12.51	□□□□□ -0.41
GARNL3-218	ENST00000487565	RAPGEF2	Q9Y4G8	1499 aa		12.5	□□□□□ -0.41
GARNL3-218	ENST00000487565	PPP1R37	O75864	691 aa		12.49	□□□□□ -0.41
GARNL3-218	ENST00000487565	GRIN2A	Q12879	1464 aa		12.47	□□□□□ -0.41
GARNL3-218	ENST00000487565	LCE2D	Q5TA82	110 aa	Predicted RBP	12.47	□□□□□ -0.41
GARNL3-218	ENST00000487565	TMEM92	Q6UXU6	159 aa		12.46	□□□□□ -0.41
GARNL3-218	ENST00000487565	RYDEN	Q9NUL5	291 aa	Known RBP	12.46	□□□□□ -0.41
GARNL3-218	ENST00000487565	CHD1	O14646	1710 aa		12.45	□□□□□ -0.42
GARNL3-218	ENST00000487565	POTEM	A6NI47	508 aa		12.44	□□□□□ -0.42
GARNL3-218	ENST00000487565	ST18	O60284	1047 aa		12.44	□□□□□ -0.42
GARNL3-218	ENST00000487565	POTEG	Q6S5H5	508 aa		12.43	□□□□□ -0.42
GARNL3-218	ENST00000487565	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.43	□□□□□ -0.42
GARNL3-218	ENST00000487565	CEP170	Q5SW79	1584 aa		12.39	□□□□□ -0.43
GARNL3-218	ENST00000487565	CTTNBP2	Q8WZ74	1663 aa		12.39	□□□□□ -0.43
GARNL3-218	ENST00000487565	NUP160	Q12769	1436 aa		12.39	□□□□□ -0.43
GARNL3-218	ENST00000487565	GTPBP6	O43824	516 aa	Predicted RBP	12.37	□□□□□ -0.43
GARNL3-218	ENST00000487565	UBTF	P17480	764 aa	Known RBP	12.37	□□□□□ -0.43
GARNL3-218	ENST00000487565	IQGAP2	Q13576	1575 aa		12.36	□□□□□ -0.43
GARNL3-218	ENST00000487565	HOXB3	P14651	431 aa	Predicted RBP	12.36	□□□□□ -0.43
GARNL3-218	ENST00000487565	DOK7	Q18PE1	504 aa		12.36	□□□□□ -0.43
GARNL3-218	ENST00000487565	TNIK	Q9UKE5	1360 aa		12.35	□□□□□ -0.43
GARNL3-218	ENST00000487565	C2orf72	A6NCS6	295 aa		12.35	□□□□□ -0.43
GARNL3-218	ENST00000487565	TMC2	Q8TDI7	906 aa		12.35	□□□□□ -0.43
GARNL3-218	ENST00000487565	KIAA0586	Q9BVV6	1533 aa		12.34	□□□□□ -0.43
GARNL3-218	ENST00000487565	ZNF710	Q8N1W2	664 aa		12.34	□□□□□ -0.43

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