RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 CROCC2H7BZ55 1655 aa19.17■□□□□ 0.66
COL6A3-207ENST00000433762 TROQ12816 1431 aaPredicted RBP19.17■□□□□ 0.66
COL6A3-207ENST00000433762 MPHOSPH9Q99550 1183 aa19.17■□□□□ 0.66
COL6A3-207ENST00000433762 SYNJ2O15056 1496 aa19.15■□□□□ 0.66
COL6A3-207ENST00000433762 ADGRL2O95490 1459 aa19.15■□□□□ 0.66
COL6A3-207ENST00000433762 ANKRD30BQ9BXX2 1392 aa19.15■□□□□ 0.66
COL6A3-207ENST00000433762 CHMP7Q8WUX9 453 aaPredicted RBP19.14■□□□□ 0.65
COL6A3-207ENST00000433762 TEX14Q8IWB6 1497 aa19.13■□□□□ 0.65
COL6A3-207ENST00000433762 FBLN2P98095 1184 aa19.13■□□□□ 0.65
COL6A3-207ENST00000433762 CEP170Q5SW79 1584 aa19.12■□□□□ 0.65
COL6A3-207ENST00000433762 TRIM52Q96A61 297 aa19.11■□□□□ 0.65
COL6A3-207ENST00000433762 EIF4G2P78344 907 aaKnown RBP eCLIP19.11■□□□□ 0.65
COL6A3-207ENST00000433762 CHIC2Q9UKJ5 165 aa19.11■□□□□ 0.65
COL6A3-207ENST00000433762 CAMSAP2Q08AD1 1489 aa19.1■□□□□ 0.65
COL6A3-207ENST00000433762 NUP160Q12769 1436 aa19.1■□□□□ 0.65
COL6A3-207ENST00000433762 NCOA1Q15788 1441 aa19.09■□□□□ 0.65
COL6A3-207ENST00000433762 CNTLNQ9NXG0 1405 aa19.09■□□□□ 0.65
COL6A3-207ENST00000433762 HIRIP3Q9BW71 556 aaPredicted RBP19.08■□□□□ 0.65
COL6A3-207ENST00000433762 CARMIL2Q6F5E8 1435 aa19.08■□□□□ 0.64
COL6A3-207ENST00000433762 HSPA5P11021 654 aaKnown RBP19.07■□□□□ 0.64
COL6A3-207ENST00000433762 SHANK2Q9UPX8 1470 aa19.06■□□□□ 0.64
COL6A3-207ENST00000433762 NEFLP07196 543 aa19.06■□□□□ 0.64
COL6A3-207ENST00000433762 GPATCH8Q9UKJ3 1502 aaKnown RBP19.06■□□□□ 0.64
COL6A3-207ENST00000433762 WASHC2AQ641Q2 1341 aa19.06■□□□□ 0.64
COL6A3-207ENST00000433762 PZPP20742 1482 aa19.04■□□□□ 0.64
COL6A3-207ENST00000433762 ABCA8O94911 1581 aa19.03■□□□□ 0.64
COL6A3-207ENST00000433762 L3MBTL2Q969R5 705 aa19.03■□□□□ 0.64
COL6A3-207ENST00000433762 MBD5Q9P267 1494 aa19.03■□□□□ 0.64
COL6A3-207ENST00000433762 SPATA31E1Q6ZUB1 1445 aa19.03■□□□□ 0.64
COL6A3-207ENST00000433762 KIF14Q15058 1648 aa19.02■□□□□ 0.63
COL6A3-207ENST00000433762 TSHZ2Q9NRE2 1034 aa19.01■□□□□ 0.63
COL6A3-207ENST00000433762 CCDC7Q96M83 1385 aa19.01■□□□□ 0.63
COL6A3-207ENST00000433762 CDC42BPAQ5VT25 1732 aa19■□□□□ 0.63
COL6A3-207ENST00000433762 PRG4Q92954 1404 aaPredicted RBP19■□□□□ 0.63
COL6A3-207ENST00000433762 CHD1O14646 1710 aa19■□□□□ 0.63
COL6A3-207ENST00000433762 KDM5DQ9BY66 1539 aa18.99■□□□□ 0.63
COL6A3-207ENST00000433762 PLB1Q6P1J6 1458 aa18.99■□□□□ 0.63
COL6A3-207ENST00000433762 FKBP8Q14318 412 aa18.99■□□□□ 0.63
COL6A3-207ENST00000433762 KIAA1107Q9UPP5 1409 aa18.99■□□□□ 0.63
COL6A3-207ENST00000433762 ANKRD30AQ9BXX3 1397 aa18.98■□□□□ 0.63
COL6A3-207ENST00000433762 ABCC10Q5T3U5 1492 aa18.97■□□□□ 0.63
COL6A3-207ENST00000433762 CFDP1Q9UEE9 299 aaPredicted RBP18.96■□□□□ 0.63
COL6A3-207ENST00000433762 ARHGEF5Q12774 1597 aa18.96■□□□□ 0.63
COL6A3-207ENST00000433762 SLC4A1APQ9BWU0 796 aaKnown RBP18.96■□□□□ 0.63
COL6A3-207ENST00000433762 ERICH6BQ5W0A0 696 aa18.95■□□□□ 0.62
COL6A3-207ENST00000433762 ZNF644Q9H582 1327 aaPredicted RBP18.94■□□□□ 0.62
COL6A3-207ENST00000433762 ARHGEF12Q9NZN5 1544 aa18.94■□□□□ 0.62
COL6A3-207ENST00000433762 ARID4BQ4LE39 1312 aaPredicted RBP18.93■□□□□ 0.62
COL6A3-207ENST00000433762 UHRF1BP1Q6BDS2 1440 aa18.92■□□□□ 0.62
COL6A3-207ENST00000433762 NBPF8Q3BBV2 869 aa18.9■□□□□ 0.62
COL6A3-207ENST00000433762 JPH4Q96JJ6 628 aa18.9■□□□□ 0.62
COL6A3-207ENST00000433762 ANKRD50Q9ULJ7 1429 aa18.9■□□□□ 0.62
COL6A3-207ENST00000433762 ARID3CA6NKF2 412 aa18.89■□□□□ 0.61
COL6A3-207ENST00000433762 PRKRIP1Q9H875 184 aaPredicted RBP18.89■□□□□ 0.61
COL6A3-207ENST00000433762 KDM5CP41229 1560 aa18.88■□□□□ 0.61
COL6A3-207ENST00000433762 ATP10BO94823 1461 aa18.88■□□□□ 0.61
COL6A3-207ENST00000433762 PTPRGP23470 1445 aa18.87■□□□□ 0.61
COL6A3-207ENST00000433762 HNRNPUQ00839 825 aaKnown RBP eCLIP18.86■□□□□ 0.61
COL6A3-207ENST00000433762 FOXD1Q16676 465 aa18.86■□□□□ 0.61
COL6A3-207ENST00000433762 C9orf84Q5VXU9 1444 aa18.86■□□□□ 0.61
COL6A3-207ENST00000433762 RALGAPBQ86X10 1494 aa18.86■□□□□ 0.61
COL6A3-207ENST00000433762 KIF7Q2M1P5 1343 aa18.85■□□□□ 0.61
COL6A3-207ENST00000433762 PLEKHD1A6NEE1 506 aa18.84■□□□□ 0.61
COL6A3-207ENST00000433762 PREX2Q70Z35 1606 aa18.84■□□□□ 0.61
COL6A3-207ENST00000433762 C11orf95C9JLR9 678 aaPredicted RBP18.83■□□□□ 0.6
COL6A3-207ENST00000433762 ROCK2O75116 1388 aaKnown RBP18.83■□□□□ 0.6
COL6A3-207ENST00000433762 ZBED9Q6R2W3 1325 aa18.82■□□□□ 0.6
COL6A3-207ENST00000433762 MAST1Q9Y2H9 1570 aa18.81■□□□□ 0.6
COL6A3-207ENST00000433762 BCORL1Q5H9F3 1711 aa18.8■□□□□ 0.6
COL6A3-207ENST00000433762 BCANQ96GW7 911 aa18.79■□□□□ 0.6
COL6A3-207ENST00000433762 RSPH4AQ5TD94 716 aa18.79■□□□□ 0.6
COL6A3-207ENST00000433762 USP47Q96K76 1375 aa18.79■□□□□ 0.6
COL6A3-207ENST00000433762 CDC42BPBQ9Y5S2 1711 aa18.78■□□□□ 0.6
COL6A3-207ENST00000433762 CCDC141Q6ZP82 1450 aa18.78■□□□□ 0.6
COL6A3-207ENST00000433762 PKD2Q13563 968 aa18.77■□□□□ 0.6
COL6A3-207ENST00000433762 SHROOM2Q13796 1616 aa18.77■□□□□ 0.6
COL6A3-207ENST00000433762 DHX29Q7Z478 1369 aaKnown RBP18.77■□□□□ 0.59
COL6A3-207ENST00000433762 CLASP1Q7Z460 1538 aa18.76■□□□□ 0.59
COL6A3-207ENST00000433762 SAMD9LQ8IVG5 1584 aa18.76■□□□□ 0.59
COL6A3-207ENST00000433762 UNC13BO14795 1591 aa18.75■□□□□ 0.59
COL6A3-207ENST00000433762 KTN1Q86UP2 1357 aaKnown RBP18.74■□□□□ 0.59
COL6A3-207ENST00000433762 NUP155O75694 1391 aa18.74■□□□□ 0.59
COL6A3-207ENST00000433762 TSPY4P0CV99 314 aa18.74■□□□□ 0.59
COL6A3-207ENST00000433762 TSPY10P0CW01 314 aa18.74■□□□□ 0.59
COL6A3-207ENST00000433762 MRS2Q9HD23 443 aa18.74■□□□□ 0.59
COL6A3-207ENST00000433762 KIF15Q9NS87 1388 aa18.73■□□□□ 0.59
COL6A3-207ENST00000433762 ZNF777Q9ULD5 760 aaPredicted RBP18.73■□□□□ 0.59
COL6A3-207ENST00000433762 PLXNC1O60486 1568 aa18.73■□□□□ 0.59
COL6A3-207ENST00000433762 E9PCH4 1651 aa18.72■□□□□ 0.59
COL6A3-207ENST00000433762 OSCARQ8IYS5 282 aa18.72■□□□□ 0.59
COL6A3-207ENST00000433762 LAMC1P11047 1609 aa18.72■□□□□ 0.59
COL6A3-207ENST00000433762 PLEKHH2Q8IVE3 1493 aa18.7■□□□□ 0.58
COL6A3-207ENST00000433762 FAM135AQ9P2D6 1515 aa18.7■□□□□ 0.58
COL6A3-207ENST00000433762 CCDC184Q52MB2 194 aa18.69■□□□□ 0.58
COL6A3-207ENST00000433762 PPP4R2Q9NY27 417 aa18.68■□□□□ 0.58
COL6A3-207ENST00000433762 SMG6Q86US8 1419 aaKnown RBP18.67■□□□□ 0.58
COL6A3-207ENST00000433762 MYO5CQ9NQX4 1742 aa18.67■□□□□ 0.58
COL6A3-207ENST00000433762 ANP32EQ9BTT0 268 aa18.67■□□□□ 0.58
COL6A3-207ENST00000433762 RBM19Q9Y4C8 960 aaKnown RBP18.67■□□□□ 0.58
COL6A3-207ENST00000433762 TRPM1Q7Z4N2 1603 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms