RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 HFM1A2PYH4 1435 aa10.2□□□□□ -0.78
COL28A1-202ENST00000430711 SLC4A1APQ9BWU0 796 aaKnown RBP10.2□□□□□ -0.78
COL28A1-202ENST00000430711 IRX6P78412 446 aaPredicted RBP10.19□□□□□ -0.78
COL28A1-202ENST00000430711 CDK13Q14004 1512 aaKnown RBP10.19□□□□□ -0.78
COL28A1-202ENST00000430711 GAPVD1Q14C86 1478 aa10.19□□□□□ -0.78
COL28A1-202ENST00000430711 MYOM3Q5VTT5 1437 aa10.19□□□□□ -0.78
COL28A1-202ENST00000430711 TONSLQ96HA7 1378 aa10.19□□□□□ -0.78
COL28A1-202ENST00000430711 UACAQ9BZF9 1416 aa10.18□□□□□ -0.78
COL28A1-202ENST00000430711 KIF13AQ9H1H9 1805 aa10.18□□□□□ -0.78
COL28A1-202ENST00000430711 FBXO41Q8TF61 875 aa10.18□□□□□ -0.78
COL28A1-202ENST00000430711 DMRT2Q9Y5R5 561 aa10.18□□□□□ -0.78
COL28A1-202ENST00000430711 FMN1Q68DA7 1419 aa10.18□□□□□ -0.78
COL28A1-202ENST00000430711 C11orf95C9JLR9 678 aaPredicted RBP10.17□□□□□ -0.78
COL28A1-202ENST00000430711 UGGT2Q9NYU1 1516 aa10.17□□□□□ -0.78
COL28A1-202ENST00000430711 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.17□□□□□ -0.78
COL28A1-202ENST00000430711 WASHC2AQ641Q2 1341 aa10.16□□□□□ -0.78
COL28A1-202ENST00000430711 SUPT6HQ7KZ85 1726 aaKnown RBP10.15□□□□□ -0.78
COL28A1-202ENST00000430711 TARBP1Q13395 1621 aaKnown RBP10.15□□□□□ -0.79
COL28A1-202ENST00000430711 ANP32CO43423 234 aa10.13□□□□□ -0.79
COL28A1-202ENST00000430711 HSPA5P11021 654 aaKnown RBP10.13□□□□□ -0.79
COL28A1-202ENST00000430711 ZNF644Q9H582 1327 aaPredicted RBP10.13□□□□□ -0.79
COL28A1-202ENST00000430711 HECW2Q9P2P5 1572 aa10.13□□□□□ -0.79
COL28A1-202ENST00000430711 LMTK3Q96Q04 1460 aa10.13□□□□□ -0.79
COL28A1-202ENST00000430711 EHBP1L1Q8N3D4 1523 aa10.12□□□□□ -0.79
COL28A1-202ENST00000430711 SENP3-EIF4A1A0A087X0R7 540 aa10.12□□□□□ -0.79
COL28A1-202ENST00000430711 PBRM1Q86U86 1689 aa10.11□□□□□ -0.79
COL28A1-202ENST00000430711 GCC2Q8IWJ2 1684 aa10.11□□□□□ -0.79
COL28A1-202ENST00000430711 CCER2I3L3R5 266 aa10.11□□□□□ -0.79
COL28A1-202ENST00000430711 EPRSP07814 1512 aaKnown RBP10.1□□□□□ -0.79
COL28A1-202ENST00000430711 HNRNPUQ00839 825 aaKnown RBP eCLIP10.1□□□□□ -0.79
COL28A1-202ENST00000430711 NBPF8Q3BBV2 869 aa10.1□□□□□ -0.79
COL28A1-202ENST00000430711 TIMELESSQ9UNS1 1208 aa10.1□□□□□ -0.79
COL28A1-202ENST00000430711 HECW1Q76N89 1606 aa10.09□□□□□ -0.79
COL28A1-202ENST00000430711 SOCS7O14512 581 aa10.09□□□□□ -0.79
COL28A1-202ENST00000430711 L3MBTL2Q969R5 705 aa10.09□□□□□ -0.79
COL28A1-202ENST00000430711 RNF216Q9NWF9 866 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-202ENST00000430711 RBM19Q9Y4C8 960 aaKnown RBP10.08□□□□□ -0.8
COL28A1-202ENST00000430711 CNGB1Q14028 1251 aaPredicted RBP10.08□□□□□ -0.8
COL28A1-202ENST00000430711 TCOF1Q13428 1488 aaKnown RBP10.08□□□□□ -0.8
COL28A1-202ENST00000430711 FBLN2P98095 1184 aa10.06□□□□□ -0.8
COL28A1-202ENST00000430711 MPHOSPH9Q99550 1183 aa10.06□□□□□ -0.8
COL28A1-202ENST00000430711 ADAMTS12P58397 1594 aa10.06□□□□□ -0.8
COL28A1-202ENST00000430711 IQGAP2Q13576 1575 aa10.06□□□□□ -0.8
COL28A1-202ENST00000430711 ANP32EQ9BTT0 268 aa10.06□□□□□ -0.8
COL28A1-202ENST00000430711 TEX14Q8IWB6 1497 aa10.04□□□□□ -0.8
COL28A1-202ENST00000430711 ZBTB22O15209 634 aa10.02□□□□□ -0.8
COL28A1-202ENST00000430711 HOXD11P31277 338 aaPredicted RBP10.02□□□□□ -0.8
COL28A1-202ENST00000430711 MAGI1Q96QZ7 1491 aaPredicted RBP10.02□□□□□ -0.81
COL28A1-202ENST00000430711 ABCC5O15440 1437 aa10.02□□□□□ -0.81
COL28A1-202ENST00000430711 DISP1Q96F81 1524 aa10.02□□□□□ -0.81
COL28A1-202ENST00000430711 DAPK1P53355 1430 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 CNTLNQ9NXG0 1405 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 FAM9BQ8IZU0 186 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 NUP153P49790 1475 aaKnown RBP10.01□□□□□ -0.81
COL28A1-202ENST00000430711 NEFLP07196 543 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 CCDC7Q96M83 1385 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 ANKRD30BQ9BXX2 1392 aa10.01□□□□□ -0.81
COL28A1-202ENST00000430711 NCOA1Q15788 1441 aa10□□□□□ -0.81
COL28A1-202ENST00000430711 MYT1Q01538 1121 aa10□□□□□ -0.81
COL28A1-202ENST00000430711 BCORL1Q5H9F3 1711 aa10□□□□□ -0.81
COL28A1-202ENST00000430711 ADGRL1O94910 1474 aa10□□□□□ -0.81
COL28A1-202ENST00000430711 PRG4Q92954 1404 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-202ENST00000430711 KIF7Q2M1P5 1343 aa9.99□□□□□ -0.81
COL28A1-202ENST00000430711 EIF4G2P78344 907 aaKnown RBP eCLIP9.99□□□□□ -0.81
COL28A1-202ENST00000430711 PRKRIP1Q9H875 184 aaPredicted RBP9.99□□□□□ -0.81
COL28A1-202ENST00000430711 DNMT1P26358 1616 aaKnown RBP9.99□□□□□ -0.81
COL28A1-202ENST00000430711 KIF14Q15058 1648 aa9.99□□□□□ -0.81
COL28A1-202ENST00000430711 PZPP20742 1482 aa9.98□□□□□ -0.81
COL28A1-202ENST00000430711 KIAA0556O60303 1618 aa9.98□□□□□ -0.81
COL28A1-202ENST00000430711 ABCC10Q5T3U5 1492 aa9.98□□□□□ -0.81
COL28A1-202ENST00000430711 RPRD2Q5VT52 1461 aaKnown RBP9.98□□□□□ -0.81
COL28A1-202ENST00000430711 SPATA31E1Q6ZUB1 1445 aa9.98□□□□□ -0.81
COL28A1-202ENST00000430711 SYNJ2O15056 1496 aa9.97□□□□□ -0.81
COL28A1-202ENST00000430711 AKNAQ7Z591 1439 aa9.97□□□□□ -0.81
COL28A1-202ENST00000430711 ZNF326Q5BKZ1 582 aaKnown RBP9.96□□□□□ -0.81
COL28A1-202ENST00000430711 B4GALNT3Q6L9W6 998 aa9.96□□□□□ -0.81
COL28A1-202ENST00000430711 PLB1Q6P1J6 1458 aa9.96□□□□□ -0.81
COL28A1-202ENST00000430711 MIA2Q96PC5 1412 aa9.96□□□□□ -0.82
COL28A1-202ENST00000430711 MRS2Q9HD23 443 aa9.95□□□□□ -0.82
COL28A1-202ENST00000430711 DIP2BQ9P265 1576 aa9.95□□□□□ -0.82
COL28A1-202ENST00000430711 POLR3GLQ9BT43 218 aa9.95□□□□□ -0.82
COL28A1-202ENST00000430711 ZNF777Q9ULD5 760 aaPredicted RBP9.95□□□□□ -0.82
COL28A1-202ENST00000430711 CHMP7Q8WUX9 453 aaPredicted RBP9.94□□□□□ -0.82
COL28A1-202ENST00000430711 RAPGEF6Q8TEU7 1601 aa9.94□□□□□ -0.82
COL28A1-202ENST00000430711 ILDR2Q71H61 639 aa9.94□□□□□ -0.82
COL28A1-202ENST00000430711 DHX29Q7Z478 1369 aaKnown RBP9.93□□□□□ -0.82
COL28A1-202ENST00000430711 CAMSAP2Q08AD1 1489 aa9.93□□□□□ -0.82
COL28A1-202ENST00000430711 MBD5Q9P267 1494 aa9.92□□□□□ -0.82
COL28A1-202ENST00000430711 POLR1AO95602 1720 aaPredicted RBP9.92□□□□□ -0.82
COL28A1-202ENST00000430711 CEP170Q5SW79 1584 aa9.91□□□□□ -0.82
COL28A1-202ENST00000430711 GRIN2AQ12879 1464 aa9.9□□□□□ -0.82
COL28A1-202ENST00000430711 SHROOM2Q13796 1616 aa9.9□□□□□ -0.82
COL28A1-202ENST00000430711 GPATCH8Q9UKJ3 1502 aaKnown RBP9.9□□□□□ -0.82
COL28A1-202ENST00000430711 ROCK1Q13464 1354 aa9.9□□□□□ -0.83
COL28A1-202ENST00000430711 KIAA0586Q9BVV6 1533 aa9.89□□□□□ -0.83
COL28A1-202ENST00000430711 CROCC2H7BZ55 1655 aa9.88□□□□□ -0.83
COL28A1-202ENST00000430711 FAM69CQ0P6D2 419 aa9.88□□□□□ -0.83
COL28A1-202ENST00000430711 PKD2Q13563 968 aa9.88□□□□□ -0.83
COL28A1-202ENST00000430711 USP47Q96K76 1375 aa9.88□□□□□ -0.83
COL28A1-202ENST00000430711 CDC42BPAQ5VT25 1732 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms