RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 FRMPD1Q5SYB0 1578 aa14.54□□□□□ -0.08
HDAC1-202ENST00000428704 FANCAO15360 1455 aa14.53□□□□□ -0.08
HDAC1-202ENST00000428704 RAPGEF2Q9Y4G8 1499 aa14.53□□□□□ -0.08
HDAC1-202ENST00000428704 GOLGA3Q08378 1498 aa14.52□□□□□ -0.08
HDAC1-202ENST00000428704 MLECQ14165 292 aa14.52□□□□□ -0.09
HDAC1-202ENST00000428704 ABCA9Q8IUA7 1624 aa14.51□□□□□ -0.09
HDAC1-202ENST00000428704 AKNAQ7Z591 1439 aa14.5□□□□□ -0.09
HDAC1-202ENST00000428704 FAM9AQ8IZU1 332 aaPredicted RBP14.49□□□□□ -0.09
HDAC1-202ENST00000428704 DENND4BO75064 1496 aaPredicted RBP14.49□□□□□ -0.09
HDAC1-202ENST00000428704 CTTNBP2Q8WZ74 1663 aa14.47□□□□□ -0.09
HDAC1-202ENST00000428704 ATP10BO94823 1461 aa14.47□□□□□ -0.09
HDAC1-202ENST00000428704 C1QBPQ07021 282 aaKnown RBP14.46□□□□□ -0.09
HDAC1-202ENST00000428704 TTC37Q6PGP7 1564 aa14.45□□□□□ -0.1
HDAC1-202ENST00000428704 FHOD3Q2V2M9 1422 aa14.44□□□□□ -0.1
HDAC1-202ENST00000428704 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.44□□□□□ -0.1
HDAC1-202ENST00000428704 HNRNPUL2Q1KMD3 747 aaKnown RBP14.44□□□□□ -0.1
HDAC1-202ENST00000428704 PRXQ9BXM0 1461 aa14.44□□□□□ -0.1
HDAC1-202ENST00000428704 PTPRTO14522 1441 aa14.43□□□□□ -0.1
HDAC1-202ENST00000428704 UHRF1BP1Q6BDS2 1440 aa14.43□□□□□ -0.1
HDAC1-202ENST00000428704 CEBPAP49715 358 aaPredicted RBP14.43□□□□□ -0.1
HDAC1-202ENST00000428704 IQSEC2Q5JU85 1478 aa14.43□□□□□ -0.1
HDAC1-202ENST00000428704 PREX1Q8TCU6 1659 aa14.42□□□□□ -0.1
HDAC1-202ENST00000428704 ZFYVE16Q7Z3T8 1539 aa14.42□□□□□ -0.1
HDAC1-202ENST00000428704 EFCAB5A4FU69 1503 aa14.41□□□□□ -0.1
HDAC1-202ENST00000428704 FER1L4A9Z1Z3 1794 aa14.4□□□□□ -0.1
HDAC1-202ENST00000428704 STRCQ7RTU9 1775 aa14.4□□□□□ -0.1
HDAC1-202ENST00000428704 LTBP4Q8N2S1 1624 aa14.39□□□□□ -0.11
HDAC1-202ENST00000428704 RICTORQ6R327 1708 aa14.38□□□□□ -0.11
HDAC1-202ENST00000428704 UBAP1LF5GYI3 381 aa14.38□□□□□ -0.11
HDAC1-202ENST00000428704 SAMD1Q6SPF0 538 aaPredicted RBP14.38□□□□□ -0.11
HDAC1-202ENST00000428704 MAGI2Q86UL8 1455 aa14.38□□□□□ -0.11
HDAC1-202ENST00000428704 ZMYM4Q5VZL5 1548 aa14.37□□□□□ -0.11
HDAC1-202ENST00000428704 P3H3Q8IVL6 736 aa14.37□□□□□ -0.11
HDAC1-202ENST00000428704 SIGLEC1Q9BZZ2 1709 aa14.37□□□□□ -0.11
HDAC1-202ENST00000428704 ARHGEF12Q9NZN5 1544 aa14.36□□□□□ -0.11
HDAC1-202ENST00000428704 EEA1Q15075 1411 aa14.32□□□□□ -0.12
HDAC1-202ENST00000428704 CFAP74Q9C0B2 1584 aa14.32□□□□□ -0.12
HDAC1-202ENST00000428704 C9orf84Q5VXU9 1444 aa14.31□□□□□ -0.12
HDAC1-202ENST00000428704 ATP10AO60312 1499 aa14.31□□□□□ -0.12
HDAC1-202ENST00000428704 HECW1Q76N89 1606 aa14.3□□□□□ -0.12
HDAC1-202ENST00000428704 PLEKHD1A6NEE1 506 aa14.3□□□□□ -0.12
HDAC1-202ENST00000428704 MED1Q15648 1581 aaPredicted RBP14.3□□□□□ -0.12
HDAC1-202ENST00000428704 APLP2Q06481 763 aa14.28□□□□□ -0.12
HDAC1-202ENST00000428704 NCOA1Q15788 1441 aa14.28□□□□□ -0.12
HDAC1-202ENST00000428704 SCAPERQ9BY12 1400 aa14.27□□□□□ -0.12
HDAC1-202ENST00000428704 ZNF335Q9H4Z2 1342 aaPredicted RBP14.27□□□□□ -0.12
HDAC1-202ENST00000428704 RAPGEF6Q8TEU7 1601 aa14.26□□□□□ -0.13
HDAC1-202ENST00000428704 SAMD9Q5K651 1589 aa14.26□□□□□ -0.13
HDAC1-202ENST00000428704 ATXN8OSP0DMR3 200 aa14.25□□□□□ -0.13
HDAC1-202ENST00000428704 HSPA1LP34931 641 aa14.25□□□□□ -0.13
HDAC1-202ENST00000428704 ESF1Q9H501 851 aaKnown RBP14.24□□□□□ -0.13
HDAC1-202ENST00000428704 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.24□□□□□ -0.13
HDAC1-202ENST00000428704 NUP153P49790 1475 aaKnown RBP14.24□□□□□ -0.13
HDAC1-202ENST00000428704 TRAPPC8Q9Y2L5 1435 aa14.23□□□□□ -0.13
HDAC1-202ENST00000428704 PIP4K2BP78356 416 aa14.22□□□□□ -0.13
HDAC1-202ENST00000428704 CACNB1Q02641 598 aaPredicted RBP14.22□□□□□ -0.13
HDAC1-202ENST00000428704 MYT1LQ9UL68 1186 aa14.21□□□□□ -0.13
HDAC1-202ENST00000428704 NCKAP5LQ9HCH0 1330 aa14.2□□□□□ -0.14
HDAC1-202ENST00000428704 SETD1BQ9UPS6 1966 aaKnown RBP14.2□□□□□ -0.14
HDAC1-202ENST00000428704 CAMSAP1Q5T5Y3 1602 aa14.18□□□□□ -0.14
HDAC1-202ENST00000428704 SPINK5Q9NQ38 1064 aaPredicted RBP14.17□□□□□ -0.14
HDAC1-202ENST00000428704 PLCH2O75038 1416 aa14.16□□□□□ -0.14
HDAC1-202ENST00000428704 TOM1O60784 492 aa14.16□□□□□ -0.14
HDAC1-202ENST00000428704 C3P01024 1663 aa14.15□□□□□ -0.14
HDAC1-202ENST00000428704 EFCAB2Q5VUJ9 269 aa14.15□□□□□ -0.14
HDAC1-202ENST00000428704 ATF5Q9Y2D1 282 aaPredicted RBP14.14□□□□□ -0.15
HDAC1-202ENST00000428704 ZNF518AQ6AHZ1 1483 aa14.13□□□□□ -0.15
HDAC1-202ENST00000428704 PKD2Q13563 968 aa14.13□□□□□ -0.15
HDAC1-202ENST00000428704 CAPN15O75808 1086 aa14.12□□□□□ -0.15
HDAC1-202ENST00000428704 AFAP1Q8N556 730 aa14.12□□□□□ -0.15
HDAC1-202ENST00000428704 RANGAP1P46060 587 aaPredicted RBP14.11□□□□□ -0.15
HDAC1-202ENST00000428704 CNTLNQ9NXG0 1405 aa14.11□□□□□ -0.15
HDAC1-202ENST00000428704 NPATQ14207 1427 aa14.09□□□□□ -0.15
HDAC1-202ENST00000428704 AGLP35573 1532 aa14.09□□□□□ -0.15
HDAC1-202ENST00000428704 DIP2CQ9Y2E4 1556 aa14.09□□□□□ -0.15
HDAC1-202ENST00000428704 PLA2R1Q13018 1463 aa14.08□□□□□ -0.16
HDAC1-202ENST00000428704 ZNF219Q9P2Y4 722 aaPredicted RBP14.08□□□□□ -0.16
HDAC1-202ENST00000428704 REREQ9P2R6 1566 aa14.08□□□□□ -0.16
HDAC1-202ENST00000428704 KDM5CP41229 1560 aa14.07□□□□□ -0.16
HDAC1-202ENST00000428704 TCOF1Q13428 1488 aaKnown RBP14.06□□□□□ -0.16
HDAC1-202ENST00000428704 ZMYM3Q14202 1370 aa14.04□□□□□ -0.16
HDAC1-202ENST00000428704 CDK13Q14004 1512 aaKnown RBP14.04□□□□□ -0.16
HDAC1-202ENST00000428704 ARHGAP35Q9NRY4 1499 aa14.03□□□□□ -0.16
HDAC1-202ENST00000428704 MLH3Q9UHC1 1453 aa14.03□□□□□ -0.16
HDAC1-202ENST00000428704 CPS1P31327 1500 aa14.03□□□□□ -0.16
HDAC1-202ENST00000428704 ABCA6Q8N139 1617 aa14.03□□□□□ -0.16
HDAC1-202ENST00000428704 ARHGAP5Q13017 1502 aa14.02□□□□□ -0.16
HDAC1-202ENST00000428704 PTPRKQ15262 1439 aa14.02□□□□□ -0.16
HDAC1-202ENST00000428704 RGS17Q9UGC6 210 aaPredicted RBP14.01□□□□□ -0.17
HDAC1-202ENST00000428704 MYO5CQ9NQX4 1742 aa13.99□□□□□ -0.17
HDAC1-202ENST00000428704 UBTFP17480 764 aaKnown RBP13.99□□□□□ -0.17
HDAC1-202ENST00000428704 CEP170BQ9Y4F5 1589 aaPredicted RBP13.99□□□□□ -0.17
HDAC1-202ENST00000428704 SHANK2Q9UPX8 1470 aa13.99□□□□□ -0.17
HDAC1-202ENST00000428704 ATP1B4Q9UN42 357 aaPredicted RBP13.98□□□□□ -0.17
HDAC1-202ENST00000428704 LRRIQ1Q96JM4 1722 aa13.98□□□□□ -0.17
HDAC1-202ENST00000428704 MYO3AQ8NEV4 1616 aa13.97□□□□□ -0.17
HDAC1-202ENST00000428704 CDK11AQ9UQ88 783 aaPredicted RBP13.97□□□□□ -0.17
HDAC1-202ENST00000428704 ZNF142P52746 1687 aaPredicted RBP13.97□□□□□ -0.17
HDAC1-202ENST00000428704 MROH2AA6NES4 1674 aa13.96□□□□□ -0.17
HDAC1-202ENST00000428704 KIF14Q15058 1648 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms