RNA–Protein interactions for RNA: ENST00000414368.2

LINC00343-201, long intergenic non-protein coding RNA 343, humanhuman

TSL 2

Gene LINC00343, Length 864 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-201ENST00000414368 PDCD7Q8N8D1 485 aaKnown RBP12.07□□□□□ -0.48
LINC00343-201ENST00000414368 CFTRP13569 1480 aa12.06□□□□□ -0.48
LINC00343-201ENST00000414368 ERCC6Q03468 1493 aa12.04□□□□□ -0.48
LINC00343-201ENST00000414368 ERBB3P21860 1342 aa12.04□□□□□ -0.48
LINC00343-201ENST00000414368 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
LINC00343-201ENST00000414368 PDS5BQ9NTI5 1447 aa12.02□□□□□ -0.49
LINC00343-201ENST00000414368 PRDM2Q13029 1718 aa12□□□□□ -0.49
LINC00343-201ENST00000414368 HOXB1P14653 301 aaPredicted RBP11.99□□□□□ -0.49
LINC00343-201ENST00000414368 PKD2Q13563 968 aa11.99□□□□□ -0.49
LINC00343-201ENST00000414368 FANCD2Q9BXW9 1451 aa11.98□□□□□ -0.49
LINC00343-201ENST00000414368 ZNF710Q8N1W2 664 aa11.98□□□□□ -0.49
LINC00343-201ENST00000414368 HOXB3P14651 431 aaPredicted RBP11.97□□□□□ -0.49
LINC00343-201ENST00000414368 PCDHB8Q9UN66 801 aa11.97□□□□□ -0.49
LINC00343-201ENST00000414368 MKRN3Q13064 507 aaKnown RBP11.96□□□□□ -0.49
LINC00343-201ENST00000414368 GOLGA2Q08379 1002 aa11.95□□□□□ -0.5
LINC00343-201ENST00000414368 CIZ1Q9ULV3 898 aaPredicted RBP11.95□□□□□ -0.5
LINC00343-201ENST00000414368 ECM2O94769 699 aaPredicted RBP11.94□□□□□ -0.5
LINC00343-201ENST00000414368 CEP164Q9UPV0 1460 aa11.94□□□□□ -0.5
LINC00343-201ENST00000414368 PYGBP11216 843 aa11.93□□□□□ -0.5
LINC00343-201ENST00000414368 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP11.92□□□□□ -0.5
LINC00343-201ENST00000414368 THOC2Q8NI27 1593 aaKnown RBP11.92□□□□□ -0.5
LINC00343-201ENST00000414368 PTGER2P43116 358 aa11.91□□□□□ -0.5
LINC00343-201ENST00000414368 VARS2Q5ST30 1063 aaKnown RBP11.9□□□□□ -0.5
LINC00343-201ENST00000414368 MRC2Q9UBG0 1479 aa11.89□□□□□ -0.51
LINC00343-201ENST00000414368 DOK7Q18PE1 504 aa11.88□□□□□ -0.51
LINC00343-201ENST00000414368 URB2Q14146 1524 aaKnown RBP11.87□□□□□ -0.51
LINC00343-201ENST00000414368 SLC24A1O60721 1099 aa11.87□□□□□ -0.51
LINC00343-201ENST00000414368 DCAF8Q5TAQ9 597 aa11.87□□□□□ -0.51
LINC00343-201ENST00000414368 GSE1Q14687 1217 aa11.85□□□□□ -0.51
LINC00343-201ENST00000414368 WDR62O43379 1518 aa11.85□□□□□ -0.51
LINC00343-201ENST00000414368 ZNF687Q8N1G0 1237 aa11.83□□□□□ -0.52
LINC00343-201ENST00000414368 TRIM41Q8WV44 630 aa11.83□□□□□ -0.52
LINC00343-201ENST00000414368 G3V3G9 751 aa11.82□□□□□ -0.52
LINC00343-201ENST00000414368 CUX2O14529 1486 aa11.82□□□□□ -0.52
LINC00343-201ENST00000414368 TOPBP1Q92547 1522 aa11.81□□□□□ -0.52
LINC00343-201ENST00000414368 RIMBP2O15034 1052 aa11.8□□□□□ -0.52
LINC00343-201ENST00000414368 PLA2G2EQ9NZK7 142 aa11.8□□□□□ -0.52
LINC00343-201ENST00000414368 ABCC8Q09428 1581 aa11.79□□□□□ -0.52
LINC00343-201ENST00000414368 CUX1P39880 1505 aa11.79□□□□□ -0.52
LINC00343-201ENST00000414368 DNMBPQ6XZF7 1577 aa11.79□□□□□ -0.52
LINC00343-201ENST00000414368 DPY19L2Q6NUT2 758 aa11.78□□□□□ -0.52
LINC00343-201ENST00000414368 ANKRD13DQ6ZTN6 518 aa11.77□□□□□ -0.53
LINC00343-201ENST00000414368 RGL2O15211 777 aa11.76□□□□□ -0.53
LINC00343-201ENST00000414368 BOLA1Q9Y3E2 137 aa11.76□□□□□ -0.53
LINC00343-201ENST00000414368 ZNF467Q7Z7K2 595 aaPredicted RBP11.74□□□□□ -0.53
LINC00343-201ENST00000414368 ILDR1Q86SU0 546 aaPredicted RBP11.74□□□□□ -0.53
LINC00343-201ENST00000414368 SYNJ1O43426 1573 aa11.73□□□□□ -0.53
LINC00343-201ENST00000414368 WRNQ14191 1432 aaPredicted RBP eCLIP11.73□□□□□ -0.53
LINC00343-201ENST00000414368 POLA1P09884 1462 aaPredicted RBP11.71□□□□□ -0.53
LINC00343-201ENST00000414368 FGD5Q6ZNL6 1462 aa11.71□□□□□ -0.53
LINC00343-201ENST00000414368 RAD54L2Q9Y4B4 1467 aa11.7□□□□□ -0.54
LINC00343-201ENST00000414368 TOP2BQ02880 1626 aa11.69□□□□□ -0.54
LINC00343-201ENST00000414368 BIVM-ERCC5R4GMW8 1640 aa11.69□□□□□ -0.54
LINC00343-201ENST00000414368 PSEN1P49768 467 aa11.68□□□□□ -0.54
LINC00343-201ENST00000414368 SOGA1O94964 1423 aa11.68□□□□□ -0.54
LINC00343-201ENST00000414368 TARBP1Q13395 1621 aaKnown RBP11.68□□□□□ -0.54
LINC00343-201ENST00000414368 ZSWIM6Q9HCJ5 1215 aa11.67□□□□□ -0.54
LINC00343-201ENST00000414368 IFT140Q96RY7 1462 aa11.67□□□□□ -0.54
LINC00343-201ENST00000414368 ZNF608Q9ULD9 1512 aaPredicted RBP11.66□□□□□ -0.54
LINC00343-201ENST00000414368 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.64□□□□□ -0.55
LINC00343-201ENST00000414368 TAOK2Q9UL54 1235 aa11.64□□□□□ -0.55
LINC00343-201ENST00000414368 PLCB2Q00722 1185 aa11.63□□□□□ -0.55
LINC00343-201ENST00000414368 AQRO60306 1485 aaKnown RBP eCLIP11.63□□□□□ -0.55
LINC00343-201ENST00000414368 CHGAP10645 457 aaKnown RBP11.62□□□□□ -0.55
LINC00343-201ENST00000414368 BBXQ8WY36 941 aaPredicted RBP11.62□□□□□ -0.55
LINC00343-201ENST00000414368 HCSTQ9UBK5 93 aa11.62□□□□□ -0.55
LINC00343-201ENST00000414368 TDRD9Q8NDG6 1382 aaKnown RBP11.62□□□□□ -0.55
LINC00343-201ENST00000414368 LSM11P83369 360 aaKnown RBP eCLIP11.61□□□□□ -0.55
LINC00343-201ENST00000414368 EIF4G3O43432 1585 aaKnown RBP11.6□□□□□ -0.55
LINC00343-201ENST00000414368 RIOK3O14730 519 aaKnown RBP11.6□□□□□ -0.55
LINC00343-201ENST00000414368 GPR153Q6NV75 609 aa11.6□□□□□ -0.55
LINC00343-201ENST00000414368 WDR97A6NE52 1622 aa11.6□□□□□ -0.55
LINC00343-201ENST00000414368 CHRM1P11229 460 aaPredicted RBP11.59□□□□□ -0.55
LINC00343-201ENST00000414368 RNF25Q96BH1 459 aaPredicted RBP11.58□□□□□ -0.56
LINC00343-201ENST00000414368 ABCA10Q8WWZ4 1543 aa11.58□□□□□ -0.56
LINC00343-201ENST00000414368 CABP2Q9NPB3 220 aa11.54□□□□□ -0.56
LINC00343-201ENST00000414368 GAPVD1Q14C86 1478 aa11.54□□□□□ -0.56
LINC00343-201ENST00000414368 ABCA5Q8WWZ7 1642 aa11.53□□□□□ -0.56
LINC00343-201ENST00000414368 VGFO15240 615 aaPredicted RBP11.53□□□□□ -0.56
LINC00343-201ENST00000414368 HAP1P54257 671 aaPredicted RBP11.53□□□□□ -0.56
LINC00343-201ENST00000414368 HS6ST3Q8IZP7 471 aa11.52□□□□□ -0.57
LINC00343-201ENST00000414368 PBRM1Q86U86 1689 aa11.52□□□□□ -0.57
LINC00343-201ENST00000414368 PDAP1Q13442 181 aaKnown RBP11.51□□□□□ -0.57
LINC00343-201ENST00000414368 PAXIP1Q6ZW49 1069 aaPredicted RBP11.51□□□□□ -0.57
LINC00343-201ENST00000414368 CFAP44Q96MT7 982 aa11.5□□□□□ -0.57
LINC00343-201ENST00000414368 GRIN2BQ13224 1484 aa11.5□□□□□ -0.57
LINC00343-201ENST00000414368 ZNF316A6NFI3 1004 aaPredicted RBP11.49□□□□□ -0.57
LINC00343-201ENST00000414368 ARSIQ5FYB1 569 aa11.49□□□□□ -0.57
LINC00343-201ENST00000414368 SNAPC4Q5SXM2 1469 aa11.49□□□□□ -0.57
LINC00343-201ENST00000414368 RUSC2Q8N2Y8 1516 aa11.49□□□□□ -0.57
LINC00343-201ENST00000414368 STK25O00506 426 aa11.48□□□□□ -0.57
LINC00343-201ENST00000414368 KIF27Q86VH2 1401 aa11.47□□□□□ -0.57
LINC00343-201ENST00000414368 SPRYD3Q8NCJ5 442 aa11.46□□□□□ -0.57
LINC00343-201ENST00000414368 CHD1O14646 1710 aa11.46□□□□□ -0.58
LINC00343-201ENST00000414368 TMEM92Q6UXU6 159 aa11.45□□□□□ -0.58
LINC00343-201ENST00000414368 IRX2Q9BZI1 471 aaPredicted RBP11.45□□□□□ -0.58
LINC00343-201ENST00000414368 MAGI1Q96QZ7 1491 aaPredicted RBP11.44□□□□□ -0.58
LINC00343-201ENST00000414368 ERICH3Q5RHP9 1530 aa11.44□□□□□ -0.58
LINC00343-201ENST00000414368 IGF1RP08069 1367 aa11.43□□□□□ -0.58
LINC00343-201ENST00000414368 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms