RNA–Protein interactions for RNA: ENST00000414368.2

LINC00343-201, long intergenic non-protein coding RNA 343, humanhuman

TSL 2

Gene LINC00343, Length 864 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00343-201ENST00000414368 AEBP2Q6ZN18 517 aaPredicted RBP27.71■■■□□ 2.03
LINC00343-201ENST00000414368 CHIC1Q5VXU3 224 aa25.93■■□□□ 1.74
LINC00343-201ENST00000414368 SENP3Q9H4L4 574 aaPredicted RBP23.84■■□□□ 1.41
LINC00343-201ENST00000414368 PHF23Q9BUL5 403 aaPredicted RBP23.4■■□□□ 1.34
LINC00343-201ENST00000414368 POTEDQ86YR6 584 aa22.49■■□□□ 1.19
LINC00343-201ENST00000414368 FOXD1Q16676 465 aa22.33■■□□□ 1.17
LINC00343-201ENST00000414368 MSH5O43196 834 aa21.3■■□□□ 1
LINC00343-201ENST00000414368 PIAS4Q8N2W9 510 aaPredicted RBP20.64■□□□□ 0.89
LINC00343-201ENST00000414368 PPP6R1Q9UPN7 881 aa20.09■□□□□ 0.81
LINC00343-201ENST00000414368 ADRA2BP18089 450 aa19.99■□□□□ 0.79
LINC00343-201ENST00000414368 PLPPR3Q6T4P5 718 aa19.83■□□□□ 0.77
LINC00343-201ENST00000414368 CACNB1Q02641 598 aaPredicted RBP18.94■□□□□ 0.62
LINC00343-201ENST00000414368 DMRT2Q9Y5R5 561 aa18.72■□□□□ 0.59
LINC00343-201ENST00000414368 MAPK8IP2Q13387 824 aaPredicted RBP18.67■□□□□ 0.58
LINC00343-201ENST00000414368 SCAF1Q9H7N4 1312 aaKnown RBP18.34■□□□□ 0.53
LINC00343-201ENST00000414368 DCAF8L1A6NGE4 600 aa18.09■□□□□ 0.49
LINC00343-201ENST00000414368 RNF39Q9H2S5 420 aa18.06■□□□□ 0.48
LINC00343-201ENST00000414368 C1QBPQ07021 282 aaKnown RBP17.76■□□□□ 0.43
LINC00343-201ENST00000414368 HOXD11P31277 338 aaPredicted RBP17.63■□□□□ 0.41
LINC00343-201ENST00000414368 POTEHQ6S545 545 aa17.44■□□□□ 0.38
LINC00343-201ENST00000414368 PPP4R3CPQ6ZMV5 832 aa17.25■□□□□ 0.35
LINC00343-201ENST00000414368 RNF216Q9NWF9 866 aaPredicted RBP17.25■□□□□ 0.35
LINC00343-201ENST00000414368 DNAJC5BQ9UF47 199 aa17.22■□□□□ 0.35
LINC00343-201ENST00000414368 CNKSR2Q8WXI2 1034 aa17.16■□□□□ 0.34
LINC00343-201ENST00000414368 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.87■□□□□ 0.29
LINC00343-201ENST00000414368 DSG3P32926 999 aa16.58■□□□□ 0.24
LINC00343-201ENST00000414368 CAPN15O75808 1086 aa16.49■□□□□ 0.23
LINC00343-201ENST00000414368 SPINK5Q9NQ38 1064 aaPredicted RBP16.43■□□□□ 0.22
LINC00343-201ENST00000414368 U3KPZ7 1027 aaPredicted RBP16.34■□□□□ 0.21
LINC00343-201ENST00000414368 NCBP3Q53F19 620 aaKnown RBP16.32■□□□□ 0.2
LINC00343-201ENST00000414368 NISCHQ9Y2I1 1504 aa16.28■□□□□ 0.2
LINC00343-201ENST00000414368 NPM3O75607 178 aaKnown RBP16.02■□□□□ 0.16
LINC00343-201ENST00000414368 ABCB7O75027 752 aa16■□□□□ 0.15
LINC00343-201ENST00000414368 TRHP20396 242 aaPredicted RBP15.98■□□□□ 0.15
LINC00343-201ENST00000414368 CHRDL2Q6WN34 429 aa15.92■□□□□ 0.14
LINC00343-201ENST00000414368 ZNF219Q9P2Y4 722 aaPredicted RBP15.89■□□□□ 0.13
LINC00343-201ENST00000414368 RBM42Q9BTD8 480 aaKnown RBP15.88■□□□□ 0.13
LINC00343-201ENST00000414368 SP7Q8TDD2 431 aaPredicted RBP15.87■□□□□ 0.13
LINC00343-201ENST00000414368 APLP2Q06481 763 aa15.84■□□□□ 0.13
LINC00343-201ENST00000414368 KCNA4P22459 653 aa15.67■□□□□ 0.1
LINC00343-201ENST00000414368 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.57■□□□□ 0.08
LINC00343-201ENST00000414368 HNRNPUL2Q1KMD3 747 aaKnown RBP15.57■□□□□ 0.08
LINC00343-201ENST00000414368 SLC4A2P04920 1241 aa15.55■□□□□ 0.08
LINC00343-201ENST00000414368 SAMD1Q6SPF0 538 aaPredicted RBP15.43■□□□□ 0.06
LINC00343-201ENST00000414368 HAX1O00165 279 aa15.37■□□□□ 0.05
LINC00343-201ENST00000414368 PIP4P2Q8N4L2 257 aa15.32■□□□□ 0.04
LINC00343-201ENST00000414368 POLA2Q14181 598 aa15.31■□□□□ 0.04
LINC00343-201ENST00000414368 AKT1S1Q96B36 256 aa15.29■□□□□ 0.04
LINC00343-201ENST00000414368 REM2Q8IYK8 340 aaPredicted RBP15.15■□□□□ 0.02
LINC00343-201ENST00000414368 FXR2P51116 673 aaKnown RBP eCLIP15.04■□□□□ -0
LINC00343-201ENST00000414368 EVX2Q03828 476 aa15.04■□□□□ -0
LINC00343-201ENST00000414368 SLC4A1APQ9BWU0 796 aaKnown RBP15.03■□□□□ -0
LINC00343-201ENST00000414368 PITPNM1O00562 1244 aa14.98□□□□□ -0.01
LINC00343-201ENST00000414368 EHMT2Q96KQ7 1210 aa14.97□□□□□ -0.01
LINC00343-201ENST00000414368 ZBTB12Q9Y330 459 aaPredicted RBP14.92□□□□□ -0.02
LINC00343-201ENST00000414368 LHX8Q68G74 356 aa14.89□□□□□ -0.03
LINC00343-201ENST00000414368 MYCNP04198 464 aaPredicted RBP14.86□□□□□ -0.03
LINC00343-201ENST00000414368 PLSCR2Q9NRY7 297 aa14.84□□□□□ -0.03
LINC00343-201ENST00000414368 OSCARQ8IYS5 282 aa14.83□□□□□ -0.04
LINC00343-201ENST00000414368 GABBR2O75899 941 aa14.67□□□□□ -0.06
LINC00343-201ENST00000414368 C19orf67A6NJJ6 358 aa14.61□□□□□ -0.07
LINC00343-201ENST00000414368 PRKAR2AP13861 404 aaKnown RBP14.61□□□□□ -0.07
LINC00343-201ENST00000414368 ATF5Q9Y2D1 282 aaPredicted RBP14.58□□□□□ -0.08
LINC00343-201ENST00000414368 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
LINC00343-201ENST00000414368 CLEC11AQ9Y240 323 aa14.43□□□□□ -0.1
LINC00343-201ENST00000414368 CCDC180Q9P1Z9 1646 aa14.38□□□□□ -0.11
LINC00343-201ENST00000414368 ZBTB22O15209 634 aa14.38□□□□□ -0.11
LINC00343-201ENST00000414368 SPDYE1Q8NFV5 336 aaPredicted RBP14.37□□□□□ -0.11
LINC00343-201ENST00000414368 FOXD4L1Q9NU39 408 aa14.37□□□□□ -0.11
LINC00343-201ENST00000414368 SPDYE2BA6NHP3 402 aa14.36□□□□□ -0.11
LINC00343-201ENST00000414368 SPDYE6P0CI01 402 aa14.36□□□□□ -0.11
LINC00343-201ENST00000414368 SPDYE2Q495Y8 402 aa14.36□□□□□ -0.11
LINC00343-201ENST00000414368 POTEIP0CG38 1075 aa14.31□□□□□ -0.12
LINC00343-201ENST00000414368 CHADLQ6NUI6 762 aa14.23□□□□□ -0.13
LINC00343-201ENST00000414368 FBLN2P98095 1184 aa14.14□□□□□ -0.15
LINC00343-201ENST00000414368 DCBLD2Q96PD2 775 aa14.1□□□□□ -0.15
LINC00343-201ENST00000414368 CD44P16070 742 aaKnown RBP14.09□□□□□ -0.15
LINC00343-201ENST00000414368 CLCN6P51797 869 aa14.09□□□□□ -0.15
LINC00343-201ENST00000414368 POTEMA6NI47 508 aa14.08□□□□□ -0.16
LINC00343-201ENST00000414368 ZNF692Q9BU19 519 aaPredicted RBP14.06□□□□□ -0.16
LINC00343-201ENST00000414368 PRR29P0C7W0 189 aa14.04□□□□□ -0.16
LINC00343-201ENST00000414368 ABCC9O60706 1549 aa14.02□□□□□ -0.16
LINC00343-201ENST00000414368 SSUH2Q9Y2M2 353 aa14.02□□□□□ -0.17
LINC00343-201ENST00000414368 POTEGQ6S5H5 508 aa14□□□□□ -0.17
LINC00343-201ENST00000414368 OTUD5Q96G74 571 aa13.99□□□□□ -0.17
LINC00343-201ENST00000414368 PCDH10Q9P2E7 1040 aa13.91□□□□□ -0.18
LINC00343-201ENST00000414368 FARP1Q9Y4F1 1045 aaPredicted RBP13.91□□□□□ -0.18
LINC00343-201ENST00000414368 MKRN4PQ13434 485 aaPredicted RBP13.84□□□□□ -0.19
LINC00343-201ENST00000414368 POTEB2H3BUK9 544 aa13.82□□□□□ -0.2
LINC00343-201ENST00000414368 ATXN8OSP0DMR3 200 aa13.82□□□□□ -0.2
LINC00343-201ENST00000414368 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
LINC00343-201ENST00000414368 ZNF579Q8NAF0 562 aaKnown RBP13.79□□□□□ -0.2
LINC00343-201ENST00000414368 ZRANB1Q9UGI0 708 aa13.75□□□□□ -0.21
LINC00343-201ENST00000414368 GALR2O43603 387 aaPredicted RBP13.7□□□□□ -0.22
LINC00343-201ENST00000414368 DCAF8L2P0C7V8 631 aa13.64□□□□□ -0.23
LINC00343-201ENST00000414368 ZCCHC6Q5VYS8 1495 aaKnown RBP13.57□□□□□ -0.24
LINC00343-201ENST00000414368 PELP1Q8IZL8 1130 aaKnown RBP13.53□□□□□ -0.24
LINC00343-201ENST00000414368 FAM163AQ96GL9 167 aaPredicted RBP13.53□□□□□ -0.24
LINC00343-201ENST00000414368 LCE2DQ5TA82 110 aaPredicted RBP13.5□□□□□ -0.25
LINC00343-201ENST00000414368 MAMSTRQ6ZN01 415 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms