RNA–Protein interactions for RNA: ENST00000409064.5

KDM3A-202, Transcript of lysine demethylase 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM3A, Length 4,621 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3A-202ENST00000409064 NUDCQ9Y266 331 aa13.38□□□□□ -0.27
KDM3A-202ENST00000409064 U2SURPO15042 1029 aaKnown RBP13.37□□□□□ -0.27
KDM3A-202ENST00000409064 LAS1LQ9Y4W2 734 aaKnown RBP13.36□□□□□ -0.27
KDM3A-202ENST00000409064 SYNJ1O43426 1573 aa13.35□□□□□ -0.27
KDM3A-202ENST00000409064 IGF1RP08069 1367 aa13.35□□□□□ -0.27
KDM3A-202ENST00000409064 TMF1P82094 1093 aa13.35□□□□□ -0.27
KDM3A-202ENST00000409064 CCDC18Q5T9S5 1454 aa13.35□□□□□ -0.27
KDM3A-202ENST00000409064 MAPK8IP3Q9UPT6 1336 aa13.35□□□□□ -0.27
KDM3A-202ENST00000409064 NGDNQ8NEJ9 315 aaKnown RBP13.33□□□□□ -0.28
KDM3A-202ENST00000409064 SETD5Q9C0A6 1442 aa13.33□□□□□ -0.28
KDM3A-202ENST00000409064 RAB3GAP2Q9H2M9 1393 aa13.33□□□□□ -0.28
KDM3A-202ENST00000409064 CC2D1BQ5T0F9 858 aaKnown RBP13.32□□□□□ -0.28
KDM3A-202ENST00000409064 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.32□□□□□ -0.28
KDM3A-202ENST00000409064 TIMELESSQ9UNS1 1208 aa13.32□□□□□ -0.28
KDM3A-202ENST00000409064 MRC2Q9UBG0 1479 aa13.32□□□□□ -0.28
KDM3A-202ENST00000409064 MPHOSPH9Q99550 1183 aa13.31□□□□□ -0.28
KDM3A-202ENST00000409064 HDGFL2Q7Z4V5 671 aaPredicted RBP13.31□□□□□ -0.28
KDM3A-202ENST00000409064 TSHZ2Q9NRE2 1034 aa13.3□□□□□ -0.28
KDM3A-202ENST00000409064 GRIN2BQ13224 1484 aa13.3□□□□□ -0.28
KDM3A-202ENST00000409064 PRG4Q92954 1404 aaPredicted RBP13.28□□□□□ -0.28
KDM3A-202ENST00000409064 MYH16Q9H6N6 1097 aa13.28□□□□□ -0.28
KDM3A-202ENST00000409064 CCER2I3L3R5 266 aa13.26□□□□□ -0.29
KDM3A-202ENST00000409064 MORC1Q86VD1 984 aa13.26□□□□□ -0.29
KDM3A-202ENST00000409064 AFAP1Q8N556 730 aa13.25□□□□□ -0.29
KDM3A-202ENST00000409064 ERICH3Q5RHP9 1530 aa13.25□□□□□ -0.29
KDM3A-202ENST00000409064 TRAK1Q9UPV9 953 aa13.25□□□□□ -0.29
KDM3A-202ENST00000409064 CFTRP13569 1480 aa13.24□□□□□ -0.29
KDM3A-202ENST00000409064 ZNF330Q9Y3S2 320 aaPredicted RBP13.24□□□□□ -0.29
KDM3A-202ENST00000409064 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
KDM3A-202ENST00000409064 RRBP1Q9P2E9 1410 aaKnown RBP13.22□□□□□ -0.29
KDM3A-202ENST00000409064 VGFO15240 615 aaPredicted RBP13.21□□□□□ -0.29
KDM3A-202ENST00000409064 RTL5Q5HYW3 569 aaPredicted RBP13.2□□□□□ -0.3
KDM3A-202ENST00000409064 ARAP1Q96P48 1450 aa13.2□□□□□ -0.3
KDM3A-202ENST00000409064 HSP90AA1P07900 732 aaKnown RBP13.2□□□□□ -0.3
KDM3A-202ENST00000409064 LTV1Q96GA3 475 aaPredicted RBP13.2□□□□□ -0.3
KDM3A-202ENST00000409064 TOP2BQ02880 1626 aa13.2□□□□□ -0.3
KDM3A-202ENST00000409064 RTF1Q92541 710 aaKnown RBP13.19□□□□□ -0.3
KDM3A-202ENST00000409064 ZNF644Q9H582 1327 aaPredicted RBP13.19□□□□□ -0.3
KDM3A-202ENST00000409064 IRX6P78412 446 aaPredicted RBP13.19□□□□□ -0.3
KDM3A-202ENST00000409064 MEX3CQ5U5Q3 659 aaKnown RBP13.18□□□□□ -0.3
KDM3A-202ENST00000409064 PRXQ9BXM0 1461 aa13.18□□□□□ -0.3
KDM3A-202ENST00000409064 ROCK2O75116 1388 aaKnown RBP13.18□□□□□ -0.3
KDM3A-202ENST00000409064 RAPGEF3O95398 923 aa13.18□□□□□ -0.3
KDM3A-202ENST00000409064 TERF2IPQ9NYB0 399 aa13.17□□□□□ -0.3
KDM3A-202ENST00000409064 PNNQ9H307 717 aaKnown RBP13.17□□□□□ -0.3
KDM3A-202ENST00000409064 RBM19Q9Y4C8 960 aaKnown RBP13.17□□□□□ -0.3
KDM3A-202ENST00000409064 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.16□□□□□ -0.3
KDM3A-202ENST00000409064 PHF23Q9BUL5 403 aaPredicted RBP13.16□□□□□ -0.3
KDM3A-202ENST00000409064 UPF2Q9HAU5 1272 aaKnown RBP13.16□□□□□ -0.3
KDM3A-202ENST00000409064 AMPHP49418 695 aa13.16□□□□□ -0.3
KDM3A-202ENST00000409064 CCDC136Q96JN2 1154 aa13.16□□□□□ -0.3
KDM3A-202ENST00000409064 TOPBP1Q92547 1522 aa13.15□□□□□ -0.3
KDM3A-202ENST00000409064 EVA1CP58658 441 aa13.15□□□□□ -0.3
KDM3A-202ENST00000409064 ATF3P18847 181 aa13.15□□□□□ -0.3
KDM3A-202ENST00000409064 SNAPC4Q5SXM2 1469 aa13.14□□□□□ -0.31
KDM3A-202ENST00000409064 PEG3Q9GZU2 1588 aa13.14□□□□□ -0.31
KDM3A-202ENST00000409064 FTSJ3Q8IY81 847 aaKnown RBP13.14□□□□□ -0.31
KDM3A-202ENST00000409064 L3MBTL2Q969R5 705 aa13.13□□□□□ -0.31
KDM3A-202ENST00000409064 MINK1Q8N4C8 1332 aaPredicted RBP13.12□□□□□ -0.31
KDM3A-202ENST00000409064 POLA1P09884 1462 aaPredicted RBP13.12□□□□□ -0.31
KDM3A-202ENST00000409064 U2AF1L5P0DN76 240 aaPredicted RBP13.12□□□□□ -0.31
KDM3A-202ENST00000409064 U2AF1Q01081 240 aaKnown RBP eCLIP13.12□□□□□ -0.316e-7■□□□□ 10.6
KDM3A-202ENST00000409064 UNC13AQ9UPW8 1703 aa13.12□□□□□ -0.31
KDM3A-202ENST00000409064 HMGXB3Q12766 1538 aa13.11□□□□□ -0.31
KDM3A-202ENST00000409064 HSPA5P11021 654 aaKnown RBP13.11□□□□□ -0.31
KDM3A-202ENST00000409064 GOLGA2Q08379 1002 aa13.11□□□□□ -0.31
KDM3A-202ENST00000409064 PSME1Q06323 249 aa13.11□□□□□ -0.31
KDM3A-202ENST00000409064 TXNDC2Q86VQ3 553 aa13.11□□□□□ -0.31
KDM3A-202ENST00000409064 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
KDM3A-202ENST00000409064 CCDC144AA2RUR9 1427 aa13.11□□□□□ -0.31
KDM3A-202ENST00000409064 ANP32AP39687 249 aaKnown RBP13.1□□□□□ -0.31
KDM3A-202ENST00000409064 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.1□□□□□ -0.31
KDM3A-202ENST00000409064 SYNJ2O15056 1496 aa13.1□□□□□ -0.31
KDM3A-202ENST00000409064 BICRAQ9NZM4 1560 aa13.09□□□□□ -0.31
KDM3A-202ENST00000409064 EIF3AQ14152 1382 aaKnown RBP13.09□□□□□ -0.31
KDM3A-202ENST00000409064 OS9Q13438 667 aaPredicted RBP13.09□□□□□ -0.31
KDM3A-202ENST00000409064 PROSER2Q86WR7 435 aaPredicted RBP13.09□□□□□ -0.31
KDM3A-202ENST00000409064 PPP4R2Q9NY27 417 aa13.08□□□□□ -0.32
KDM3A-202ENST00000409064 LRRC9Q6ZRR7 1453 aa13.07□□□□□ -0.32
KDM3A-202ENST00000409064 KIF15Q9NS87 1388 aa13.07□□□□□ -0.32
KDM3A-202ENST00000409064 MSH5O43196 834 aa13.06□□□□□ -0.32
KDM3A-202ENST00000409064 PRDM2Q13029 1718 aa13.06□□□□□ -0.32
KDM3A-202ENST00000409064 THEMISQ8N1K5 641 aaPredicted RBP13.06□□□□□ -0.32
KDM3A-202ENST00000409064 PHLDB1Q86UU1 1377 aa13.06□□□□□ -0.32
KDM3A-202ENST00000409064 SCAPERQ9BY12 1400 aa13.05□□□□□ -0.32
KDM3A-202ENST00000409064 CUX1P39880 1505 aa13.04□□□□□ -0.32
KDM3A-202ENST00000409064 TMX4Q9H1E5 349 aaPredicted RBP13.04□□□□□ -0.32
KDM3A-202ENST00000409064 MYOM3Q5VTT5 1437 aa13.04□□□□□ -0.32
KDM3A-202ENST00000409064 ERICH6BQ5W0A0 696 aa13.03□□□□□ -0.32
KDM3A-202ENST00000409064 GTF2E1P29083 439 aaPredicted RBP13.03□□□□□ -0.32
KDM3A-202ENST00000409064 PIP4K2BP78356 416 aa13.03□□□□□ -0.32
KDM3A-202ENST00000409064 UACAQ9BZF9 1416 aa13.02□□□□□ -0.32
KDM3A-202ENST00000409064 ARHGAP5Q13017 1502 aa13.02□□□□□ -0.32
KDM3A-202ENST00000409064 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.33
KDM3A-202ENST00000409064 TIAM1Q13009 1591 aa13.02□□□□□ -0.33
KDM3A-202ENST00000409064 BIVM-ERCC5R4GMW8 1640 aa13.01□□□□□ -0.33
KDM3A-202ENST00000409064 COG3Q96JB2 828 aa13.01□□□□□ -0.33
KDM3A-202ENST00000409064 EVC2Q86UK5 1308 aa13□□□□□ -0.33
KDM3A-202ENST00000409064 ST20-MTHFSA0A0A6YYL1 179 aa13□□□□□ -0.33
KDM3A-202ENST00000409064 ANKLE2Q86XL3 938 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms