RNA–Protein interactions for RNA: ENST00000398417.6

SMAD4-202, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,495 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-202ENST00000398417 FYCO1Q9BQS8 1478 aa6.6□□□□□ -1.35
SMAD4-202ENST00000398417 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP6.6□□□□□ -1.353e-7■□□□□ 10.7
SMAD4-202ENST00000398417 ANKRD30AQ9BXX3 1397 aa6.6□□□□□ -1.35
SMAD4-202ENST00000398417 NUDCQ9Y266 331 aa6.59□□□□□ -1.35
SMAD4-202ENST00000398417 PRG4Q92954 1404 aaPredicted RBP6.59□□□□□ -1.35
SMAD4-202ENST00000398417 ST20-MTHFSA0A0A6YYL1 179 aa6.59□□□□□ -1.35
SMAD4-202ENST00000398417 ANP32AP39687 249 aaKnown RBP6.59□□□□□ -1.35
SMAD4-202ENST00000398417 RTL5Q5HYW3 569 aaPredicted RBP6.59□□□□□ -1.35
SMAD4-202ENST00000398417 CNTLNQ9NXG0 1405 aa6.59□□□□□ -1.35
SMAD4-202ENST00000398417 BCL11AQ9H165 835 aa6.58□□□□□ -1.36
SMAD4-202ENST00000398417 EXOC6Q8TAG9 804 aa6.58□□□□□ -1.36
SMAD4-202ENST00000398417 URB2Q14146 1524 aaKnown RBP6.57□□□□□ -1.36
SMAD4-202ENST00000398417 ZBTB47Q9UFB7 747 aaPredicted RBP6.57□□□□□ -1.36
SMAD4-202ENST00000398417 WDR43Q15061 677 aaKnown RBP eCLIP6.57□□□□□ -1.36
SMAD4-202ENST00000398417 MSH5O43196 834 aa6.56□□□□□ -1.36
SMAD4-202ENST00000398417 MAP3K1Q13233 1512 aa6.56□□□□□ -1.36
SMAD4-202ENST00000398417 PCF11O94913 1555 aaKnown RBP6.55□□□□□ -1.36
SMAD4-202ENST00000398417 ERCC6Q03468 1493 aa6.55□□□□□ -1.36
SMAD4-202ENST00000398417 ABCC5O15440 1437 aa6.55□□□□□ -1.36
SMAD4-202ENST00000398417 NBPF1Q3BBV0 1214 aa6.55□□□□□ -1.36
SMAD4-202ENST00000398417 ERICH6BQ5W0A0 696 aa6.55□□□□□ -1.36
SMAD4-202ENST00000398417 CARMIL2Q6F5E8 1435 aa6.55□□□□□ -1.36
SMAD4-202ENST00000398417 USP47Q96K76 1375 aa6.54□□□□□ -1.36
SMAD4-202ENST00000398417 PLIN1O60240 522 aa6.54□□□□□ -1.36
SMAD4-202ENST00000398417 CDK13Q14004 1512 aaKnown RBP6.54□□□□□ -1.36
SMAD4-202ENST00000398417 TMF1P82094 1093 aa6.54□□□□□ -1.36
SMAD4-202ENST00000398417 NOP58Q9Y2X3 529 aaKnown RBP6.54□□□□□ -1.36
SMAD4-202ENST00000398417 CANXP27824 592 aaKnown RBP6.54□□□□□ -1.36
SMAD4-202ENST00000398417 LAS1LQ9Y4W2 734 aaKnown RBP6.54□□□□□ -1.36
SMAD4-202ENST00000398417 DAPK1P53355 1430 aa6.54□□□□□ -1.36
SMAD4-202ENST00000398417 ROCK2O75116 1388 aaKnown RBP6.54□□□□□ -1.36
SMAD4-202ENST00000398417 PANK3Q9H999 370 aa6.54□□□□□ -1.36
SMAD4-202ENST00000398417 ANKRD30BQ9BXX2 1392 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 ZBED9Q6R2W3 1325 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 BIVM-ERCC5R4GMW8 1640 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 EFCAB5A4FU69 1503 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 RALBP1Q15311 655 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 MIA2Q96PC5 1412 aa6.53□□□□□ -1.36
SMAD4-202ENST00000398417 RCAN3Q9UKA8 241 aa6.52□□□□□ -1.36
SMAD4-202ENST00000398417 MYBBP1AQ9BQG0 1328 aaKnown RBP6.52□□□□□ -1.37
SMAD4-202ENST00000398417 CDCA7LQ96GN5 454 aa6.52□□□□□ -1.37
SMAD4-202ENST00000398417 NEUROD2Q15784 382 aa6.52□□□□□ -1.37
SMAD4-202ENST00000398417 CC2D2AQ9P2K1 1620 aa6.52□□□□□ -1.37
SMAD4-202ENST00000398417 GRIN2BQ13224 1484 aa6.52□□□□□ -1.37
SMAD4-202ENST00000398417 PTPRGP23470 1445 aa6.51□□□□□ -1.37
SMAD4-202ENST00000398417 KTN1Q86UP2 1357 aaKnown RBP6.51□□□□□ -1.37
SMAD4-202ENST00000398417 CCDC146Q8IYE0 955 aa6.51□□□□□ -1.37
SMAD4-202ENST00000398417 KNSTRNQ9Y448 316 aa6.51□□□□□ -1.37
SMAD4-202ENST00000398417 TNNT2P45379 298 aaPredicted RBP6.51□□□□□ -1.37
SMAD4-202ENST00000398417 DNMBPQ6XZF7 1577 aa6.51□□□□□ -1.37
SMAD4-202ENST00000398417 ANKRD50Q9ULJ7 1429 aa6.51□□□□□ -1.37
SMAD4-202ENST00000398417 FANCIQ9NVI1 1328 aa6.5□□□□□ -1.37
SMAD4-202ENST00000398417 DEKP35659 375 aaKnown RBP6.5□□□□□ -1.37
SMAD4-202ENST00000398417 SNAPC4Q5SXM2 1469 aa6.5□□□□□ -1.37
SMAD4-202ENST00000398417 EPRSP07814 1512 aaKnown RBP6.5□□□□□ -1.37
SMAD4-202ENST00000398417 RRP1P56182 461 aaKnown RBP6.5□□□□□ -1.37
SMAD4-202ENST00000398417 KIF15Q9NS87 1388 aa6.5□□□□□ -1.37
SMAD4-202ENST00000398417 EHBP1L1Q8N3D4 1523 aa6.5□□□□□ -1.37
SMAD4-202ENST00000398417 ZNF608Q9ULD9 1512 aaPredicted RBP6.49□□□□□ -1.37
SMAD4-202ENST00000398417 EFCAB2Q5VUJ9 269 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 SKAP1Q86WV1 359 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 CRBNQ96SW2 442 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 RGS3P49796 1198 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 PNISRQ8TF01 805 aaKnown RBP6.49□□□□□ -1.37
SMAD4-202ENST00000398417 KIAA1107Q9UPP5 1409 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 NLRP13Q86W25 1043 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 AKNAQ7Z591 1439 aa6.49□□□□□ -1.37
SMAD4-202ENST00000398417 NUTM2DQ5VT03 806 aaPredicted RBP6.49□□□□□ -1.37
SMAD4-202ENST00000398417 TROQ12816 1431 aaPredicted RBP6.48□□□□□ -1.37
SMAD4-202ENST00000398417 MRC2Q9UBG0 1479 aa6.48□□□□□ -1.37
SMAD4-202ENST00000398417 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.48□□□□□ -1.37
SMAD4-202ENST00000398417 ROCK1Q13464 1354 aa6.48□□□□□ -1.37
SMAD4-202ENST00000398417 KIF3BO15066 747 aa6.48□□□□□ -1.37
SMAD4-202ENST00000398417 PAK3O75914 559 aaPredicted RBP6.48□□□□□ -1.37
SMAD4-202ENST00000398417 PLB1Q6P1J6 1458 aa6.47□□□□□ -1.37
SMAD4-202ENST00000398417 KIAA0586Q9BVV6 1533 aa6.47□□□□□ -1.37
SMAD4-202ENST00000398417 IFT140Q96RY7 1462 aa6.47□□□□□ -1.37
SMAD4-202ENST00000398417 SLC4A3P48751 1232 aa6.47□□□□□ -1.37
SMAD4-202ENST00000398417 NCOA1Q15788 1441 aa6.47□□□□□ -1.37
SMAD4-202ENST00000398417 NPM1P06748 294 aaKnown RBP eCLIP6.47□□□□□ -1.37
SMAD4-202ENST00000398417 ARID4BQ4LE39 1312 aaPredicted RBP6.47□□□□□ -1.37
SMAD4-202ENST00000398417 PDE4AP27815 886 aa6.46□□□□□ -1.38
SMAD4-202ENST00000398417 FRAT1Q92837 279 aaPredicted RBP6.46□□□□□ -1.38
SMAD4-202ENST00000398417 IPO9Q96P70 1041 aaKnown RBP6.46□□□□□ -1.38
SMAD4-202ENST00000398417 TCOF1Q13428 1488 aaKnown RBP6.46□□□□□ -1.38
SMAD4-202ENST00000398417 GGT6Q6P531 493 aa6.46□□□□□ -1.38
SMAD4-202ENST00000398417 ADAMTS8Q9UP79 889 aa6.46□□□□□ -1.38
SMAD4-202ENST00000398417 ARID3AQ99856 593 aa6.46□□□□□ -1.38
SMAD4-202ENST00000398417 SAFB2Q14151 953 aaKnown RBP eCLIP6.45□□□□□ -1.38
SMAD4-202ENST00000398417 PDE3BQ13370 1112 aa6.45□□□□□ -1.38
SMAD4-202ENST00000398417 TCERG1O14776 1098 aaKnown RBP6.45□□□□□ -1.38
SMAD4-202ENST00000398417 CDCA8Q53HL2 280 aa6.45□□□□□ -1.38
SMAD4-202ENST00000398417 RSPH4AQ5TD94 716 aa6.45□□□□□ -1.38
SMAD4-202ENST00000398417 SMG6Q86US8 1419 aaKnown RBP6.45□□□□□ -1.38
SMAD4-202ENST00000398417 SPAG9O60271 1321 aaKnown RBP6.45□□□□□ -1.38
SMAD4-202ENST00000398417 CCDC144AA2RUR9 1427 aa6.44□□□□□ -1.38
SMAD4-202ENST00000398417 AFAP1Q8N556 730 aa6.44□□□□□ -1.38
SMAD4-202ENST00000398417 PTPN23Q9H3S7 1636 aa6.44□□□□□ -1.38
SMAD4-202ENST00000398417 APAF1O14727 1248 aa6.44□□□□□ -1.38
SMAD4-202ENST00000398417 MORC1Q86VD1 984 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms