RNA–Protein interactions for RNA: ENST00000394601.8

PTBP1-204, Transcript of polypyrimidine tract binding protein 1, humanhuman

TSL 1 (best) BASIC

Gene PTBP1, Length 3,185 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTBP1-204ENST00000394601 ADCY10Q96PN6 1610 aa21.99■■□□□ 1.11
PTBP1-204ENST00000394601 ARID3CA6NKF2 412 aa21.99■■□□□ 1.11
PTBP1-204ENST00000394601 ERICH6Q7L0X2 663 aa21.97■■□□□ 1.11
PTBP1-204ENST00000394601 NUP160Q12769 1436 aa21.96■■□□□ 1.11
PTBP1-204ENST00000394601 PLB1Q6P1J6 1458 aa21.95■■□□□ 1.1
PTBP1-204ENST00000394601 ZNF644Q9H582 1327 aaPredicted RBP21.94■■□□□ 1.1
PTBP1-204ENST00000394601 KIF14Q15058 1648 aa21.94■■□□□ 1.1
PTBP1-204ENST00000394601 PRG4Q92954 1404 aaPredicted RBP21.93■■□□□ 1.1
PTBP1-204ENST00000394601 ERCC6Q03468 1493 aa21.92■■□□□ 1.1
PTBP1-204ENST00000394601 MPHOSPH9Q99550 1183 aa21.91■■□□□ 1.1
PTBP1-204ENST00000394601 TROQ12816 1431 aaPredicted RBP21.91■■□□□ 1.1
PTBP1-204ENST00000394601 CROCC2H7BZ55 1655 aa21.9■■□□□ 1.1
PTBP1-204ENST00000394601 GPATCH8Q9UKJ3 1502 aaKnown RBP21.89■■□□□ 1.09
PTBP1-204ENST00000394601 ANKRD30BQ9BXX2 1392 aa21.89■■□□□ 1.09
PTBP1-204ENST00000394601 ITSN2Q9NZM3 1697 aa21.89■■□□□ 1.09
PTBP1-204ENST00000394601 CAMSAP2Q08AD1 1489 aa21.88■■□□□ 1.09
PTBP1-204ENST00000394601 ADGBQ8N7X0 1667 aa21.87■■□□□ 1.09
PTBP1-204ENST00000394601 CCER2I3L3R5 266 aa21.87■■□□□ 1.09
PTBP1-204ENST00000394601 RBM19Q9Y4C8 960 aaKnown RBP21.87■■□□□ 1.09
PTBP1-204ENST00000394601 TEX14Q8IWB6 1497 aa21.87■■□□□ 1.09
PTBP1-204ENST00000394601 ABCA8O94911 1581 aa21.86■■□□□ 1.09
PTBP1-204ENST00000394601 PRKCSHP14314 528 aaPredicted RBP21.86■■□□□ 1.09
PTBP1-204ENST00000394601 RPRD2Q5VT52 1461 aaKnown RBP21.85■■□□□ 1.09
PTBP1-204ENST00000394601 NEFLP07196 543 aa21.84■■□□□ 1.09
PTBP1-204ENST00000394601 PZPP20742 1482 aa21.83■■□□□ 1.09
PTBP1-204ENST00000394601 FOXD1Q16676 465 aa21.83■■□□□ 1.09
PTBP1-204ENST00000394601 ADGRL2O95490 1459 aa21.82■■□□□ 1.08
PTBP1-204ENST00000394601 CDC42BPAQ5VT25 1732 aa21.82■■□□□ 1.08
PTBP1-204ENST00000394601 TRIM52Q96A61 297 aa21.82■■□□□ 1.08
PTBP1-204ENST00000394601 CHMP7Q8WUX9 453 aaPredicted RBP21.81■■□□□ 1.08
PTBP1-204ENST00000394601 NCOA1Q15788 1441 aa21.81■■□□□ 1.08
PTBP1-204ENST00000394601 WASHC2AQ641Q2 1341 aa21.81■■□□□ 1.08
PTBP1-204ENST00000394601 L3MBTL2Q969R5 705 aa21.79■■□□□ 1.08
PTBP1-204ENST00000394601 ABCC10Q5T3U5 1492 aa21.79■■□□□ 1.08
PTBP1-204ENST00000394601 IRX6P78412 446 aaPredicted RBP21.79■■□□□ 1.08
PTBP1-204ENST00000394601 JPH4Q96JJ6 628 aa21.78■■□□□ 1.08
PTBP1-204ENST00000394601 HSPA5P11021 654 aaKnown RBP21.77■■□□□ 1.08
PTBP1-204ENST00000394601 CDK11AQ9UQ88 783 aaPredicted RBP21.77■■□□□ 1.08
PTBP1-204ENST00000394601 ATP10BO94823 1461 aa21.75■■□□□ 1.07
PTBP1-204ENST00000394601 ANP32CO43423 234 aa21.75■■□□□ 1.07
PTBP1-204ENST00000394601 CARMIL2Q6F5E8 1435 aa21.75■■□□□ 1.07
PTBP1-204ENST00000394601 SPATA31E1Q6ZUB1 1445 aa21.75■■□□□ 1.07
PTBP1-204ENST00000394601 POLR1AO95602 1720 aaPredicted RBP21.74■■□□□ 1.07
PTBP1-204ENST00000394601 NBPF8Q3BBV2 869 aa21.73■■□□□ 1.07
PTBP1-204ENST00000394601 MBD5Q9P267 1494 aa21.73■■□□□ 1.07
PTBP1-204ENST00000394601 C11orf95C9JLR9 678 aaPredicted RBP21.72■■□□□ 1.07
PTBP1-204ENST00000394601 CFDP1Q9UEE9 299 aaPredicted RBP21.7■■□□□ 1.06
PTBP1-204ENST00000394601 SHANK2Q9UPX8 1470 aa21.67■■□□□ 1.06
PTBP1-204ENST00000394601 FBLN2P98095 1184 aa21.67■■□□□ 1.06
PTBP1-204ENST00000394601 EIF4G2P78344 907 aaKnown RBP eCLIP21.65■■□□□ 1.061e-7■□□□□ 8.1
PTBP1-204ENST00000394601 SLC4A1APQ9BWU0 796 aaKnown RBP21.64■■□□□ 1.06
PTBP1-204ENST00000394601 CNTLNQ9NXG0 1405 aa21.64■■□□□ 1.05
PTBP1-204ENST00000394601 MSH5O43196 834 aa21.63■■□□□ 1.05
PTBP1-204ENST00000394601 KIAA1107Q9UPP5 1409 aa21.63■■□□□ 1.05
PTBP1-204ENST00000394601 NBR1Q14596 966 aa21.63■■□□□ 1.05
PTBP1-204ENST00000394601 CCDC7Q96M83 1385 aa21.62■■□□□ 1.05
PTBP1-204ENST00000394601 KDM5DQ9BY66 1539 aa21.62■■□□□ 1.05
PTBP1-204ENST00000394601 CDC42BPBQ9Y5S2 1711 aa21.62■■□□□ 1.05
PTBP1-204ENST00000394601 ARHGEF5Q12774 1597 aa21.6■■□□□ 1.05
PTBP1-204ENST00000394601 SHROOM2Q13796 1616 aa21.6■■□□□ 1.05
PTBP1-204ENST00000394601 CHD1O14646 1710 aa21.6■■□□□ 1.05
PTBP1-204ENST00000394601 ANKRD50Q9ULJ7 1429 aa21.59■■□□□ 1.05
PTBP1-204ENST00000394601 ANKRD30AQ9BXX3 1397 aa21.58■■□□□ 1.05
PTBP1-204ENST00000394601 BCORL1Q5H9F3 1711 aa21.58■■□□□ 1.04
PTBP1-204ENST00000394601 C9orf84Q5VXU9 1444 aa21.58■■□□□ 1.04
PTBP1-204ENST00000394601 SAMD9LQ8IVG5 1584 aa21.57■■□□□ 1.04
PTBP1-204ENST00000394601 PREX2Q70Z35 1606 aa21.56■■□□□ 1.04
PTBP1-204ENST00000394601 PTPRGP23470 1445 aa21.56■■□□□ 1.04
PTBP1-204ENST00000394601 ZNF777Q9ULD5 760 aaPredicted RBP21.56■■□□□ 1.04
PTBP1-204ENST00000394601 ANO8Q9HCE9 1232 aaPredicted RBP21.55■■□□□ 1.04
PTBP1-204ENST00000394601 PLEKHD1A6NEE1 506 aa21.54■■□□□ 1.04
PTBP1-204ENST00000394601 KDM5CP41229 1560 aa21.54■■□□□ 1.04
PTBP1-204ENST00000394601 CCDC184Q52MB2 194 aa21.54■■□□□ 1.04
PTBP1-204ENST00000394601 KIF7Q2M1P5 1343 aa21.52■■□□□ 1.04
PTBP1-204ENST00000394601 RTN4Q9NQC3 1192 aaKnown RBP21.51■■□□□ 1.03
PTBP1-204ENST00000394601 UHRF1BP1Q6BDS2 1440 aa21.51■■□□□ 1.03
PTBP1-204ENST00000394601 CCDC136Q96JN2 1154 aa21.5■■□□□ 1.03
PTBP1-204ENST00000394601 PKD2Q13563 968 aa21.5■■□□□ 1.03
PTBP1-204ENST00000394601 PRKRIP1Q9H875 184 aaPredicted RBP21.48■■□□□ 1.03
PTBP1-204ENST00000394601 TTC37Q6PGP7 1564 aa21.48■■□□□ 1.03
PTBP1-204ENST00000394601 ERCC6L2Q5T890 1561 aa21.47■■□□□ 1.03
PTBP1-204ENST00000394601 DEKP35659 375 aaKnown RBP21.47■■□□□ 1.03
PTBP1-204ENST00000394601 ARHGEF12Q9NZN5 1544 aa21.45■■□□□ 1.02
PTBP1-204ENST00000394601 DHX29Q7Z478 1369 aaKnown RBP21.44■■□□□ 1.02
PTBP1-204ENST00000394601 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.44■■□□□ 1.025e-7■■■□□ 14.7
PTBP1-204ENST00000394601 MAST1Q9Y2H9 1570 aa21.44■■□□□ 1.02
PTBP1-204ENST00000394601 RALGAPBQ86X10 1494 aa21.43■■□□□ 1.02
PTBP1-204ENST00000394601 NUP155O75694 1391 aa21.43■■□□□ 1.02
PTBP1-204ENST00000394601 KIF15Q9NS87 1388 aa21.43■■□□□ 1.02
PTBP1-204ENST00000394601 HNRNPMP52272 730 aaKnown RBP eCLIP21.43■■□□□ 1.024e-7■■■■□ 20
PTBP1-204ENST00000394601 CCDC141Q6ZP82 1450 aa21.43■■□□□ 1.02
PTBP1-204ENST00000394601 USP47Q96K76 1375 aa21.4■■□□□ 1.02
PTBP1-204ENST00000394601 UNC13BO14795 1591 aa21.4■■□□□ 1.02
PTBP1-204ENST00000394601 FAM135AQ9P2D6 1515 aa21.4■■□□□ 1.02
PTBP1-204ENST00000394601 SYCP2Q9BX26 1530 aa21.39■■□□□ 1.01
PTBP1-204ENST00000394601 CNGB1Q14028 1251 aaPredicted RBP21.39■■□□□ 1.01
PTBP1-204ENST00000394601 HNRNPUQ00839 825 aaKnown RBP eCLIP21.38■■□□□ 1.01
PTBP1-204ENST00000394601 ABCC2Q92887 1545 aa21.38■■□□□ 1.01
PTBP1-204ENST00000394601 PLXNC1O60486 1568 aa21.35■■□□□ 1.01
PTBP1-204ENST00000394601 MYO5CQ9NQX4 1742 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms