RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 TONSLQ96HA7 1378 aa20.53■□□□□ 0.88
MKS1-203ENST00000393120 ZNF644Q9H582 1327 aaPredicted RBP20.53■□□□□ 0.88
MKS1-203ENST00000393120 PTPRGP23470 1445 aa20.53■□□□□ 0.88
MKS1-203ENST00000393120 SCAF1Q9H7N4 1312 aaKnown RBP20.52■□□□□ 0.88
MKS1-203ENST00000393120 CAMSAP2Q08AD1 1489 aa20.51■□□□□ 0.87
MKS1-203ENST00000393120 KDM6BO15054 1643 aa20.51■□□□□ 0.87
MKS1-203ENST00000393120 KIF14Q15058 1648 aa20.51■□□□□ 0.87
MKS1-203ENST00000393120 DENND4BO75064 1496 aaPredicted RBP20.5■□□□□ 0.87
MKS1-203ENST00000393120 SHROOM2Q13796 1616 aa20.49■□□□□ 0.87
MKS1-203ENST00000393120 CHD1O14646 1710 aa20.49■□□□□ 0.87
MKS1-203ENST00000393120 ABCC10Q5T3U5 1492 aa20.49■□□□□ 0.87
MKS1-203ENST00000393120 TRIM52Q96A61 297 aa20.47■□□□□ 0.87
MKS1-203ENST00000393120 MPHOSPH9Q99550 1183 aa20.47■□□□□ 0.87
MKS1-203ENST00000393120 ADGRL2O95490 1459 aa20.45■□□□□ 0.86
MKS1-203ENST00000393120 NCOA1Q15788 1441 aa20.44■□□□□ 0.86
MKS1-203ENST00000393120 KDM5BQ9UGL1 1544 aa20.42■□□□□ 0.86
MKS1-203ENST00000393120 ADGBQ8N7X0 1667 aa20.39■□□□□ 0.85
MKS1-203ENST00000393120 CDC42BPAQ5VT25 1732 aa20.39■□□□□ 0.85
MKS1-203ENST00000393120 CROCC2H7BZ55 1655 aa20.38■□□□□ 0.85
MKS1-203ENST00000393120 ANKRD30AQ9BXX3 1397 aa20.38■□□□□ 0.85
MKS1-203ENST00000393120 SHANK2Q9UPX8 1470 aa20.38■□□□□ 0.85
MKS1-203ENST00000393120 ANKRD30BQ9BXX2 1392 aa20.37■□□□□ 0.85
MKS1-203ENST00000393120 ZNF777Q9ULD5 760 aaPredicted RBP20.37■□□□□ 0.85
MKS1-203ENST00000393120 YTHDC1Q96MU7 727 aaKnown RBP20.35■□□□□ 0.85
MKS1-203ENST00000393120 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
MKS1-203ENST00000393120 RPRD2Q5VT52 1461 aaKnown RBP20.31■□□□□ 0.84
MKS1-203ENST00000393120 ABCC2Q92887 1545 aa20.31■□□□□ 0.84
MKS1-203ENST00000393120 ARHGEF5Q12774 1597 aa20.31■□□□□ 0.84
MKS1-203ENST00000393120 PZPP20742 1482 aa20.31■□□□□ 0.84
MKS1-203ENST00000393120 SLC4A1APQ9BWU0 796 aaKnown RBP20.31■□□□□ 0.84
MKS1-203ENST00000393120 RSPH4AQ5TD94 716 aa20.3■□□□□ 0.84
MKS1-203ENST00000393120 C9orf84Q5VXU9 1444 aa20.29■□□□□ 0.84
MKS1-203ENST00000393120 ANKRD50Q9ULJ7 1429 aa20.28■□□□□ 0.84
MKS1-203ENST00000393120 MBD5Q9P267 1494 aa20.28■□□□□ 0.84
MKS1-203ENST00000393120 TSPY4P0CV99 314 aa20.27■□□□□ 0.84
MKS1-203ENST00000393120 TSPY10P0CW01 314 aa20.27■□□□□ 0.84
MKS1-203ENST00000393120 DDX10Q13206 875 aaKnown RBP20.27■□□□□ 0.84
MKS1-203ENST00000393120 ERCC6L2Q5T890 1561 aa20.27■□□□□ 0.84
MKS1-203ENST00000393120 GTF3C3Q9Y5Q9 886 aa20.27■□□□□ 0.84
MKS1-203ENST00000393120 UHRF1BP1LA0JNW5 1464 aa20.26■□□□□ 0.83
MKS1-203ENST00000393120 FOXD1Q16676 465 aa20.26■□□□□ 0.83
MKS1-203ENST00000393120 L3MBTL2Q969R5 705 aa20.26■□□□□ 0.83
MKS1-203ENST00000393120 PREX2Q70Z35 1606 aa20.26■□□□□ 0.83
MKS1-203ENST00000393120 KIAA1107Q9UPP5 1409 aa20.23■□□□□ 0.83
MKS1-203ENST00000393120 TEX14Q8IWB6 1497 aa20.22■□□□□ 0.83
MKS1-203ENST00000393120 CDC42BPBQ9Y5S2 1711 aa20.22■□□□□ 0.83
MKS1-203ENST00000393120 SAMD9LQ8IVG5 1584 aa20.21■□□□□ 0.83
MKS1-203ENST00000393120 CCDC141Q6ZP82 1450 aa20.21■□□□□ 0.83
MKS1-203ENST00000393120 HNRNPMP52272 730 aaKnown RBP eCLIP20.21■□□□□ 0.83
MKS1-203ENST00000393120 HIRIP3Q9BW71 556 aaPredicted RBP20.21■□□□□ 0.83
MKS1-203ENST00000393120 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.2■□□□□ 0.82
MKS1-203ENST00000393120 KDM5DQ9BY66 1539 aa20.2■□□□□ 0.82
MKS1-203ENST00000393120 KIF15Q9NS87 1388 aa20.18■□□□□ 0.82
MKS1-203ENST00000393120 PLEKHH2Q8IVE3 1493 aa20.17■□□□□ 0.82
MKS1-203ENST00000393120 TTC37Q6PGP7 1564 aa20.17■□□□□ 0.82
MKS1-203ENST00000393120 EIF4G2P78344 907 aaKnown RBP eCLIP20.16■□□□□ 0.82
MKS1-203ENST00000393120 PKD2Q13563 968 aa20.15■□□□□ 0.82
MKS1-203ENST00000393120 MAST1Q9Y2H9 1570 aa20.15■□□□□ 0.82
MKS1-203ENST00000393120 HSPA5P11021 654 aaKnown RBP20.15■□□□□ 0.82
MKS1-203ENST00000393120 NUP155O75694 1391 aa20.14■□□□□ 0.82
MKS1-203ENST00000393120 CCER2I3L3R5 266 aa20.14■□□□□ 0.81
MKS1-203ENST00000393120 ARHGAP5Q13017 1502 aa20.14■□□□□ 0.81
MKS1-203ENST00000393120 ZCCHC11Q5TAX3 1644 aaKnown RBP20.12■□□□□ 0.81
MKS1-203ENST00000393120 ANP32CO43423 234 aa20.12■□□□□ 0.81
MKS1-203ENST00000393120 NBPF8Q3BBV2 869 aa20.12■□□□□ 0.81
MKS1-203ENST00000393120 PLCH2O75038 1416 aa20.11■□□□□ 0.81
MKS1-203ENST00000393120 MYO5CQ9NQX4 1742 aa20.11■□□□□ 0.81
MKS1-203ENST00000393120 SYCP2Q9BX26 1530 aa20.1■□□□□ 0.81
MKS1-203ENST00000393120 WASHC2AQ641Q2 1341 aa20.06■□□□□ 0.8
MKS1-203ENST00000393120 SPATA31E1Q6ZUB1 1445 aa20.06■□□□□ 0.8
MKS1-203ENST00000393120 EFCAB2Q5VUJ9 269 aa20.06■□□□□ 0.8
MKS1-203ENST00000393120 KCNH8Q96L42 1107 aa20.06■□□□□ 0.8
MKS1-203ENST00000393120 PLXNC1O60486 1568 aa20.05■□□□□ 0.8
MKS1-203ENST00000393120 ARAP3Q8WWN8 1544 aa20.04■□□□□ 0.8
MKS1-203ENST00000393120 UHRF1BP1Q6BDS2 1440 aa20.02■□□□□ 0.8
MKS1-203ENST00000393120 ARHGEF12Q9NZN5 1544 aa20.02■□□□□ 0.8
MKS1-203ENST00000393120 FAM135AQ9P2D6 1515 aa20.01■□□□□ 0.79
MKS1-203ENST00000393120 UNC13BO14795 1591 aa20■□□□□ 0.79
MKS1-203ENST00000393120 DUOX2Q9NRD8 1548 aa19.99■□□□□ 0.79
MKS1-203ENST00000393120 CCDC7Q96M83 1385 aa19.99■□□□□ 0.79
MKS1-203ENST00000393120 ABCC1P33527 1531 aa19.98■□□□□ 0.79
MKS1-203ENST00000393120 ERBINQ96RT1 1412 aa19.97■□□□□ 0.79
MKS1-203ENST00000393120 WDR7Q9Y4E6 1490 aa19.96■□□□□ 0.79
MKS1-203ENST00000393120 CNTLNQ9NXG0 1405 aa19.95■□□□□ 0.78
MKS1-203ENST00000393120 C11orf95C9JLR9 678 aaPredicted RBP19.95■□□□□ 0.78
MKS1-203ENST00000393120 RTEL1-TNFRSF6BF6WH68 1400 aa19.94■□□□□ 0.78
MKS1-203ENST00000393120 MAGI2Q86UL8 1455 aa19.94■□□□□ 0.78
MKS1-203ENST00000393120 RALGAPBQ86X10 1494 aa19.92■□□□□ 0.78
MKS1-203ENST00000393120 IQGAP3Q86VI3 1631 aa19.92■□□□□ 0.78
MKS1-203ENST00000393120 TRAPPC8Q9Y2L5 1435 aa19.92■□□□□ 0.78
MKS1-203ENST00000393120 ARID4BQ4LE39 1312 aaPredicted RBP19.9■□□□□ 0.78
MKS1-203ENST00000393120 KIF7Q2M1P5 1343 aa19.89■□□□□ 0.77
MKS1-203ENST00000393120 POLR1AO95602 1720 aaPredicted RBP19.89■□□□□ 0.77
MKS1-203ENST00000393120 ATP10AO60312 1499 aa19.89■□□□□ 0.77
MKS1-203ENST00000393120 USP47Q96K76 1375 aa19.89■□□□□ 0.77
MKS1-203ENST00000393120 OSCARQ8IYS5 282 aa19.88■□□□□ 0.77
MKS1-203ENST00000393120 PLA2R1Q13018 1463 aa19.88■□□□□ 0.77
MKS1-203ENST00000393120 ABCA9Q8IUA7 1624 aa19.88■□□□□ 0.77
MKS1-203ENST00000393120 CCDC144AA2RUR9 1427 aa19.88■□□□□ 0.77
MKS1-203ENST00000393120 KDM5CP41229 1560 aa19.86■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms