RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 CCER2I3L3R5 266 aa12.48□□□□□ -0.41
PTPRA-204ENST00000380393 RSPH4AQ5TD94 716 aa12.47□□□□□ -0.41
PTPRA-204ENST00000380393 ABCA5Q8WWZ7 1642 aa12.47□□□□□ -0.41
PTPRA-204ENST00000380393 HNRNPUQ00839 825 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRA-204ENST00000380393 DHX37Q8IY37 1157 aaKnown RBP12.46□□□□□ -0.41
PTPRA-204ENST00000380393 CLIP1P30622 1438 aa12.46□□□□□ -0.42
PTPRA-204ENST00000380393 ARID4BQ4LE39 1312 aaPredicted RBP12.46□□□□□ -0.42
PTPRA-204ENST00000380393 NFKBIBQ15653 356 aa12.45□□□□□ -0.42
PTPRA-204ENST00000380393 CHMP7Q8WUX9 453 aaPredicted RBP12.45□□□□□ -0.42
PTPRA-204ENST00000380393 SNAPC4Q5SXM2 1469 aa12.44□□□□□ -0.42
PTPRA-204ENST00000380393 ANP32CO43423 234 aa12.44□□□□□ -0.42
PTPRA-204ENST00000380393 EIF4G3O43432 1585 aaKnown RBP12.44□□□□□ -0.42
PTPRA-204ENST00000380393 IPO4Q8TEX9 1081 aaKnown RBP12.44□□□□□ -0.42
PTPRA-204ENST00000380393 STAC3Q96MF2 364 aa12.42□□□□□ -0.42
PTPRA-204ENST00000380393 ATP1B4Q9UN42 357 aaPredicted RBP12.42□□□□□ -0.42
PTPRA-204ENST00000380393 GRIN2BQ13224 1484 aa12.42□□□□□ -0.42
PTPRA-204ENST00000380393 PDCL3Q9H2J4 239 aa12.42□□□□□ -0.42
PTPRA-204ENST00000380393 CNGB1Q14028 1251 aaPredicted RBP12.42□□□□□ -0.42
PTPRA-204ENST00000380393 CENPJQ9HC77 1338 aaPredicted RBP12.4□□□□□ -0.42
PTPRA-204ENST00000380393 DHX57Q6P158 1386 aaKnown RBP12.4□□□□□ -0.42
PTPRA-204ENST00000380393 ERICH3Q5RHP9 1530 aa12.4□□□□□ -0.42
PTPRA-204ENST00000380393 BRD2P25440 801 aaKnown RBP12.39□□□□□ -0.43
PTPRA-204ENST00000380393 ARID3CA6NKF2 412 aa12.39□□□□□ -0.43
PTPRA-204ENST00000380393 PBRM1Q86U86 1689 aa12.39□□□□□ -0.43
PTPRA-204ENST00000380393 CHMP4AQ9BY43 222 aa12.37□□□□□ -0.43
PTPRA-204ENST00000380393 FHAD1B1AJZ9 1412 aa12.37□□□□□ -0.43
PTPRA-204ENST00000380393 ARAP1Q96P48 1450 aa12.36□□□□□ -0.43
PTPRA-204ENST00000380393 CLCN1P35523 988 aa12.35□□□□□ -0.43
PTPRA-204ENST00000380393 ARHGAP35Q9NRY4 1499 aa12.34□□□□□ -0.43
PTPRA-204ENST00000380393 FHOD3Q2V2M9 1422 aa12.34□□□□□ -0.43
PTPRA-204ENST00000380393 SIN3AQ96ST3 1273 aa12.34□□□□□ -0.43
PTPRA-204ENST00000380393 ZHX1Q9UKY1 873 aaPredicted RBP12.34□□□□□ -0.43
PTPRA-204ENST00000380393 ADAMTS12P58397 1594 aa12.33□□□□□ -0.44
PTPRA-204ENST00000380393 PLCD3Q8N3E9 789 aa12.33□□□□□ -0.44
PTPRA-204ENST00000380393 CUL7Q14999 1698 aa12.33□□□□□ -0.44
PTPRA-204ENST00000380393 ZFP91Q96JP5 570 aaPredicted RBP12.32□□□□□ -0.44
PTPRA-204ENST00000380393 PPP1R15AO75807 674 aaPredicted RBP12.31□□□□□ -0.44
PTPRA-204ENST00000380393 FOXD1Q16676 465 aa12.31□□□□□ -0.44
PTPRA-204ENST00000380393 KANK4Q5T7N3 995 aaPredicted RBP12.31□□□□□ -0.44
PTPRA-204ENST00000380393 NCLP19338 710 aaKnown RBP12.31□□□□□ -0.44
PTPRA-204ENST00000380393 GRIN2AQ12879 1464 aa12.3□□□□□ -0.44
PTPRA-204ENST00000380393 DDRGK1Q96HY6 314 aa12.29□□□□□ -0.44
PTPRA-204ENST00000380393 TPM2P07951 284 aa12.28□□□□□ -0.44
PTPRA-204ENST00000380393 FRAT2O75474 233 aaPredicted RBP12.28□□□□□ -0.44
PTPRA-204ENST00000380393 SYNJ2O15056 1496 aa12.28□□□□□ -0.44
PTPRA-204ENST00000380393 VPS8Q8N3P4 1428 aa12.28□□□□□ -0.44
PTPRA-204ENST00000380393 L1TD1Q5T7N2 865 aaKnown RBP12.28□□□□□ -0.44
PTPRA-204ENST00000380393 FTSJ3Q8IY81 847 aaKnown RBP12.28□□□□□ -0.44
PTPRA-204ENST00000380393 MAGI1Q96QZ7 1491 aaPredicted RBP12.27□□□□□ -0.45
PTPRA-204ENST00000380393 PDE4AP27815 886 aa12.26□□□□□ -0.45
PTPRA-204ENST00000380393 JPH4Q96JJ6 628 aa12.26□□□□□ -0.45
PTPRA-204ENST00000380393 VGLL3A8MV65 326 aa12.25□□□□□ -0.45
PTPRA-204ENST00000380393 SLC4A3P48751 1232 aa12.25□□□□□ -0.45
PTPRA-204ENST00000380393 HAP1P54257 671 aaPredicted RBP12.24□□□□□ -0.45
PTPRA-204ENST00000380393 ZNF830Q96NB3 372 aaPredicted RBP12.24□□□□□ -0.45
PTPRA-204ENST00000380393 CEP170Q5SW79 1584 aa12.24□□□□□ -0.45
PTPRA-204ENST00000380393 SMAP1Q8IYB5 467 aaPredicted RBP12.24□□□□□ -0.45
PTPRA-204ENST00000380393 SECISBP2LQ93073 1101 aaKnown RBP12.22□□□□□ -0.45
PTPRA-204ENST00000380393 CTTNBP2Q8WZ74 1663 aa12.21□□□□□ -0.45
PTPRA-204ENST00000380393 FAM50AQ14320 339 aaKnown RBP12.21□□□□□ -0.46
PTPRA-204ENST00000380393 TMEM51Q9NW97 253 aa12.21□□□□□ -0.46
PTPRA-204ENST00000380393 SAMD1Q6SPF0 538 aaPredicted RBP12.2□□□□□ -0.46
PTPRA-204ENST00000380393 IQGAP2Q13576 1575 aa12.2□□□□□ -0.46
PTPRA-204ENST00000380393 TCERG1O14776 1098 aaKnown RBP12.2□□□□□ -0.46
PTPRA-204ENST00000380393 TEX2Q8IWB9 1127 aa12.2□□□□□ -0.46
PTPRA-204ENST00000380393 BACH2Q9BYV9 841 aa12.2□□□□□ -0.46
PTPRA-204ENST00000380393 PRDM10Q9NQV6 1147 aa12.2□□□□□ -0.46
PTPRA-204ENST00000380393 POGKQ9P215 609 aa12.2□□□□□ -0.46
PTPRA-204ENST00000380393 KIAA0586Q9BVV6 1533 aa12.19□□□□□ -0.46
PTPRA-204ENST00000380393 CHD1O14646 1710 aa12.19□□□□□ -0.46
PTPRA-204ENST00000380393 ANP32BQ92688 251 aaKnown RBP12.19□□□□□ -0.46
PTPRA-204ENST00000380393 NUP160Q12769 1436 aa12.17□□□□□ -0.46
PTPRA-204ENST00000380393 AMER1Q5JTC6 1135 aaPredicted RBP12.17□□□□□ -0.46
PTPRA-204ENST00000380393 PPP4R3BQ5MIZ7 849 aa12.17□□□□□ -0.46
PTPRA-204ENST00000380393 MAP7D2Q96T17 732 aa12.17□□□□□ -0.46
PTPRA-204ENST00000380393 ARID3AQ99856 593 aa12.17□□□□□ -0.46
PTPRA-204ENST00000380393 TNNT2P45379 298 aaPredicted RBP12.15□□□□□ -0.46
PTPRA-204ENST00000380393 DISP1Q96F81 1524 aa12.15□□□□□ -0.46
PTPRA-204ENST00000380393 SENP3-EIF4A1A0A087X0R7 540 aa12.15□□□□□ -0.46
PTPRA-204ENST00000380393 FAM13BQ9NYF5 915 aa12.15□□□□□ -0.47
PTPRA-204ENST00000380393 RAB3GAP2Q9H2M9 1393 aa12.14□□□□□ -0.47
PTPRA-204ENST00000380393 KIAA1211Q6ZU35 1233 aa12.14□□□□□ -0.47
PTPRA-204ENST00000380393 FAM9BQ8IZU0 186 aa12.14□□□□□ -0.47
PTPRA-204ENST00000380393 PRG4Q92954 1404 aaPredicted RBP12.14□□□□□ -0.47
PTPRA-204ENST00000380393 ESPNB1AK53 854 aa12.13□□□□□ -0.47
PTPRA-204ENST00000380393 UTP14CQ5TAP6 766 aaKnown RBP12.13□□□□□ -0.47
PTPRA-204ENST00000380393 PCF11O94913 1555 aaKnown RBP12.13□□□□□ -0.47
PTPRA-204ENST00000380393 ERCC6L2Q5T890 1561 aa12.13□□□□□ -0.47
PTPRA-204ENST00000380393 XRCC6P12956 609 aaKnown RBP eCLIP12.13□□□□□ -0.47
PTPRA-204ENST00000380393 CDK11BP21127 795 aaKnown RBP12.12□□□□□ -0.47
PTPRA-204ENST00000380393 TULP1O00294 542 aaPredicted RBP12.12□□□□□ -0.47
PTPRA-204ENST00000380393 HOMEZQ8IX15 550 aa12.12□□□□□ -0.47
PTPRA-204ENST00000380393 DMTNQ08495 405 aa12.12□□□□□ -0.47
PTPRA-204ENST00000380393 CCNB3Q8WWL7 1395 aa12.12□□□□□ -0.47
PTPRA-204ENST00000380393 CHRM1P11229 460 aaPredicted RBP12.11□□□□□ -0.47
PTPRA-204ENST00000380393 PANK2Q9BZ23 570 aa12.11□□□□□ -0.47
PTPRA-204ENST00000380393 SAMD9Q5K651 1589 aa12.11□□□□□ -0.47
PTPRA-204ENST00000380393 OSCARQ8IYS5 282 aa12.11□□□□□ -0.47
PTPRA-204ENST00000380393 PLB1Q6P1J6 1458 aa12.1□□□□□ -0.47
PTPRA-204ENST00000380393 GOLGA6L3A6NEY3 463 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms