RNA–Protein interactions for RNA: ENST00000377819.9

RTN3-206, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,937 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-206ENST00000377819 MARCH6O60337 910 aa13.44□□□□□ -0.26
RTN3-206ENST00000377819 CSRNP3Q8WYN3 585 aa13.44□□□□□ -0.26
RTN3-206ENST00000377819 G3V3G9 751 aa13.43□□□□□ -0.26
RTN3-206ENST00000377819 DCAF8Q5TAQ9 597 aa13.43□□□□□ -0.26
RTN3-206ENST00000377819 SYAP1Q96A49 352 aaPredicted RBP13.42□□□□□ -0.26
RTN3-206ENST00000377819 CHMP4AQ9BY43 222 aa13.42□□□□□ -0.26
RTN3-206ENST00000377819 PTMSP20962 102 aa13.4□□□□□ -0.26
RTN3-206ENST00000377819 GORABQ5T7V8 394 aa13.4□□□□□ -0.26
RTN3-206ENST00000377819 PABPN1Q86U42 306 aaKnown RBP eCLIP13.4□□□□□ -0.26
RTN3-206ENST00000377819 U2SURPO15042 1029 aaKnown RBP13.4□□□□□ -0.26
RTN3-206ENST00000377819 RGL3Q3MIN7 710 aa13.39□□□□□ -0.27
RTN3-206ENST00000377819 TSR1Q2NL82 804 aaKnown RBP13.38□□□□□ -0.27
RTN3-206ENST00000377819 CREBRFQ8IUR6 639 aa13.38□□□□□ -0.27
RTN3-206ENST00000377819 GBP4Q96PP9 640 aa13.38□□□□□ -0.27
RTN3-206ENST00000377819 VPS53Q5VIR6 699 aa13.37□□□□□ -0.27
RTN3-206ENST00000377819 HDAC5Q9UQL6 1122 aa13.37□□□□□ -0.27
RTN3-206ENST00000377819 PATL2C9JE40 543 aaKnown RBP13.36□□□□□ -0.27
RTN3-206ENST00000377819 RTF1Q92541 710 aaKnown RBP13.36□□□□□ -0.27
RTN3-206ENST00000377819 ZNF330Q9Y3S2 320 aaPredicted RBP13.35□□□□□ -0.27
RTN3-206ENST00000377819 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
RTN3-206ENST00000377819 CCDC70Q6NSX1 233 aa13.35□□□□□ -0.27
RTN3-206ENST00000377819 KIF3AQ9Y496 699 aa13.34□□□□□ -0.27
RTN3-206ENST00000377819 NCAPD3P42695 1498 aa13.34□□□□□ -0.27
RTN3-206ENST00000377819 HDGFP51858 240 aaKnown RBP13.34□□□□□ -0.27
RTN3-206ENST00000377819 GPS2Q13227 327 aa13.34□□□□□ -0.27
RTN3-206ENST00000377819 ARID3AQ99856 593 aa13.34□□□□□ -0.27
RTN3-206ENST00000377819 HMMRO75330 724 aa13.33□□□□□ -0.28
RTN3-206ENST00000377819 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.33□□□□□ -0.28
RTN3-206ENST00000377819 NOP58Q9Y2X3 529 aaKnown RBP13.33□□□□□ -0.28
RTN3-206ENST00000377819 PES1O00541 588 aaKnown RBP13.32□□□□□ -0.28
RTN3-206ENST00000377819 TAF7LQ5H9L4 462 aa13.32□□□□□ -0.28
RTN3-206ENST00000377819 HSP90B1P14625 803 aaKnown RBP13.32□□□□□ -0.28
RTN3-206ENST00000377819 CSPP1Q1MSJ5 1256 aa13.32□□□□□ -0.28
RTN3-206ENST00000377819 ANO8Q9HCE9 1232 aaPredicted RBP13.31□□□□□ -0.28
RTN3-206ENST00000377819 FRAT2O75474 233 aaPredicted RBP13.31□□□□□ -0.28
RTN3-206ENST00000377819 GTF2E1P29083 439 aaPredicted RBP13.3□□□□□ -0.28
RTN3-206ENST00000377819 KCNH8Q96L42 1107 aa13.3□□□□□ -0.28
RTN3-206ENST00000377819 SF3A1Q15459 793 aaKnown RBP13.3□□□□□ -0.28
RTN3-206ENST00000377819 BIVM-ERCC5R4GMW8 1640 aa13.3□□□□□ -0.28
RTN3-206ENST00000377819 IPO7O95373 1038 aaKnown RBP13.3□□□□□ -0.28
RTN3-206ENST00000377819 TPM1P09493 284 aa13.3□□□□□ -0.28
RTN3-206ENST00000377819 TCEAL9Q9UHQ7 104 aa13.29□□□□□ -0.28
RTN3-206ENST00000377819 TOMM22Q9NS69 142 aa13.29□□□□□ -0.28
RTN3-206ENST00000377819 IPO8O15397 1037 aaKnown RBP13.29□□□□□ -0.28
RTN3-206ENST00000377819 TPD52L1Q16890 204 aaPredicted RBP13.29□□□□□ -0.28
RTN3-206ENST00000377819 PPP4R2Q9NY27 417 aa13.28□□□□□ -0.28
RTN3-206ENST00000377819 CSB-PGBD3P0DP91 1061 aa13.28□□□□□ -0.28
RTN3-206ENST00000377819 SOX12O15370 315 aa13.28□□□□□ -0.28
RTN3-206ENST00000377819 TPM2P07951 284 aa13.28□□□□□ -0.28
RTN3-206ENST00000377819 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.28□□□□□ -0.281e-6■■■■■ 88.9
RTN3-206ENST00000377819 CDR1P51861 262 aa13.27□□□□□ -0.28
RTN3-206ENST00000377819 APBB1O00213 710 aa13.27□□□□□ -0.29
RTN3-206ENST00000377819 MTUS2Q5JR59 1369 aa13.27□□□□□ -0.29
RTN3-206ENST00000377819 CCDC88BA6NC98 1476 aa13.26□□□□□ -0.29
RTN3-206ENST00000377819 GPATCH3Q96I76 525 aa13.26□□□□□ -0.29
RTN3-206ENST00000377819 HIRIP3Q9BW71 556 aaPredicted RBP13.26□□□□□ -0.29
RTN3-206ENST00000377819 SUPT16HQ9Y5B9 1047 aaKnown RBP13.26□□□□□ -0.29
RTN3-206ENST00000377819 PLEKHD1A6NEE1 506 aa13.26□□□□□ -0.29
RTN3-206ENST00000377819 CHMP4CQ96CF2 233 aa13.26□□□□□ -0.29
RTN3-206ENST00000377819 CCDC9Q9Y3X0 531 aaKnown RBP13.26□□□□□ -0.29
RTN3-206ENST00000377819 CTDP1Q9Y5B0 961 aaPredicted RBP13.26□□□□□ -0.29
RTN3-206ENST00000377819 CCAR2Q8N163 923 aaKnown RBP13.25□□□□□ -0.29
RTN3-206ENST00000377819 SPRYD3Q8NCJ5 442 aa13.25□□□□□ -0.29
RTN3-206ENST00000377819 PAF1Q8N7H5 531 aa13.25□□□□□ -0.29
RTN3-206ENST00000377819 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
RTN3-206ENST00000377819 SENP3-EIF4A1A0A087X0R7 540 aa13.25□□□□□ -0.29
RTN3-206ENST00000377819 CALD1Q05682 793 aaKnown RBP13.24□□□□□ -0.29
RTN3-206ENST00000377819 CHMP7Q8WUX9 453 aaPredicted RBP13.24□□□□□ -0.29
RTN3-206ENST00000377819 R3HCC1Q9Y3T6 440 aaKnown RBP13.24□□□□□ -0.29
RTN3-206ENST00000377819 CHMP3Q9Y3E7 222 aa13.23□□□□□ -0.29
RTN3-206ENST00000377819 AKAP17AQ02040 695 aaKnown RBP13.22□□□□□ -0.29
RTN3-206ENST00000377819 CCDC47Q96A33 483 aaKnown RBP13.21□□□□□ -0.29
RTN3-206ENST00000377819 PHF14O94880 888 aa13.2□□□□□ -0.3
RTN3-206ENST00000377819 STK31Q9BXU1 1019 aa13.2□□□□□ -0.3
RTN3-206ENST00000377819 ODF2Q5BJF6 829 aa13.2□□□□□ -0.3
RTN3-206ENST00000377819 CCDC191Q8NCU4 936 aa13.2□□□□□ -0.3
RTN3-206ENST00000377819 CPLX2Q6PUV4 134 aaKnown RBP13.19□□□□□ -0.3
RTN3-206ENST00000377819 GZF1Q9H116 711 aaPredicted RBP13.19□□□□□ -0.3
RTN3-206ENST00000377819 ANKRD20A12PQ8NF67 263 aa13.19□□□□□ -0.3
RTN3-206ENST00000377819 TCERG1O14776 1098 aaKnown RBP13.19□□□□□ -0.3
RTN3-206ENST00000377819 BECN2A8MW95 431 aa13.18□□□□□ -0.3
RTN3-206ENST00000377819 CT47A1Q5JQC4 288 aaPredicted RBP13.18□□□□□ -0.3
RTN3-206ENST00000377819 RRP7BPQ9NSQ0 103 aa13.18□□□□□ -0.3
RTN3-206ENST00000377819 CWC22Q9HCG8 908 aaKnown RBP13.18□□□□□ -0.3
RTN3-206ENST00000377819 CCDC43Q96MW1 224 aaKnown RBP13.17□□□□□ -0.3
RTN3-206ENST00000377819 GOLGA6L19H0YKK7 550 aa13.17□□□□□ -0.3
RTN3-206ENST00000377819 RDXP35241 583 aaKnown RBP13.17□□□□□ -0.3
RTN3-206ENST00000377819 SRPK2P78362 688 aaKnown RBP13.17□□□□□ -0.3
RTN3-206ENST00000377819 KIF16BQ96L93 1317 aa13.16□□□□□ -0.3
RTN3-206ENST00000377819 RWDD1Q9H446 243 aaPredicted RBP13.15□□□□□ -0.3
RTN3-206ENST00000377819 GOLGA6L3A6NEY3 463 aa13.15□□□□□ -0.3
RTN3-206ENST00000377819 TRIM6-TRIM34B2RNG4 842 aa13.15□□□□□ -0.3
RTN3-206ENST00000377819 TRIM34Q9BYJ4 488 aa13.15□□□□□ -0.3
RTN3-206ENST00000377819 MIER1Q8N108 512 aa13.15□□□□□ -0.3
RTN3-206ENST00000377819 PCMTD1Q96MG8 357 aaPredicted RBP13.15□□□□□ -0.3
RTN3-206ENST00000377819 SYNE3Q6ZMZ3 975 aa13.15□□□□□ -0.3
RTN3-206ENST00000377819 DCAF8L1A6NGE4 600 aa13.14□□□□□ -0.31
RTN3-206ENST00000377819 MORC1Q86VD1 984 aa13.14□□□□□ -0.31
RTN3-206ENST00000377819 AMOTL1Q8IY63 956 aa13.14□□□□□ -0.31
RTN3-206ENST00000377819 DCTN1Q14203 1278 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms