RNA–Protein interactions for RNA: ENST00000369407.3

PHGDH-201, Transcript of phosphoglycerate dehydrogenase, humanhuman

TSL 2

Gene PHGDH, Length 3,180 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-201ENST00000369407 FANCD2Q9BXW9 1451 aa16.61■□□□□ 0.25
PHGDH-201ENST00000369407 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
PHGDH-201ENST00000369407 LAS1LQ9Y4W2 734 aaKnown RBP16.6■□□□□ 0.25
PHGDH-201ENST00000369407 POLA1P09884 1462 aaPredicted RBP16.59■□□□□ 0.25
PHGDH-201ENST00000369407 LRRIQ1Q96JM4 1722 aa16.59■□□□□ 0.25
PHGDH-201ENST00000369407 SLC4A1APQ9BWU0 796 aaKnown RBP16.58■□□□□ 0.24
PHGDH-201ENST00000369407 MAGI3Q5TCQ9 1506 aa16.58■□□□□ 0.24
PHGDH-201ENST00000369407 SMG6Q86US8 1419 aaKnown RBP16.58■□□□□ 0.24
PHGDH-201ENST00000369407 DNAJC5BQ9UF47 199 aa16.57■□□□□ 0.24
PHGDH-201ENST00000369407 GRIN2BQ13224 1484 aa16.55■□□□□ 0.24
PHGDH-201ENST00000369407 ABCA10Q8WWZ4 1543 aa16.55■□□□□ 0.24
PHGDH-201ENST00000369407 PRDM2Q13029 1718 aa16.55■□□□□ 0.24
PHGDH-201ENST00000369407 SUPT6HQ7KZ85 1726 aaKnown RBP16.54■□□□□ 0.24
PHGDH-201ENST00000369407 ZNF644Q9H582 1327 aaPredicted RBP16.54■□□□□ 0.24
PHGDH-201ENST00000369407 TMC1Q8TDI8 760 aa16.54■□□□□ 0.24
PHGDH-201ENST00000369407 CTTNBP2Q8WZ74 1663 aa16.53■□□□□ 0.24
PHGDH-201ENST00000369407 ANKRD30BQ9BXX2 1392 aa16.53■□□□□ 0.24
PHGDH-201ENST00000369407 UGGT2Q9NYU1 1516 aa16.53■□□□□ 0.24
PHGDH-201ENST00000369407 EXOC6Q8TAG9 804 aa16.52■□□□□ 0.24
PHGDH-201ENST00000369407 SKAP1Q86WV1 359 aa16.52■□□□□ 0.24
PHGDH-201ENST00000369407 TOPBP1Q92547 1522 aa16.52■□□□□ 0.23
PHGDH-201ENST00000369407 DHX29Q7Z478 1369 aaKnown RBP16.51■□□□□ 0.23
PHGDH-201ENST00000369407 SPATA31E1Q6ZUB1 1445 aa16.51■□□□□ 0.23
PHGDH-201ENST00000369407 NESP48681 1621 aa16.51■□□□□ 0.23
PHGDH-201ENST00000369407 EHBP1L1Q8N3D4 1523 aa16.51■□□□□ 0.23
PHGDH-201ENST00000369407 RNF123Q5XPI4 1314 aa16.5■□□□□ 0.23
PHGDH-201ENST00000369407 HECW1Q76N89 1606 aa16.5■□□□□ 0.23
PHGDH-201ENST00000369407 PNISRQ8TF01 805 aaKnown RBP16.49■□□□□ 0.23
PHGDH-201ENST00000369407 NEFMP07197 916 aa16.48■□□□□ 0.23
PHGDH-201ENST00000369407 RPRD2Q5VT52 1461 aaKnown RBP16.48■□□□□ 0.23
PHGDH-201ENST00000369407 TEX14Q8IWB6 1497 aa16.47■□□□□ 0.23
PHGDH-201ENST00000369407 CDK13Q14004 1512 aaKnown RBP16.46■□□□□ 0.23
PHGDH-201ENST00000369407 DNMBPQ6XZF7 1577 aa16.46■□□□□ 0.23
PHGDH-201ENST00000369407 USP47Q96K76 1375 aa16.46■□□□□ 0.23
PHGDH-201ENST00000369407 CUL7Q14999 1698 aa16.45■□□□□ 0.22
PHGDH-201ENST00000369407 CC2D2AQ9P2K1 1620 aa16.45■□□□□ 0.22
PHGDH-201ENST00000369407 GCC2Q8IWJ2 1684 aa16.45■□□□□ 0.22
PHGDH-201ENST00000369407 PDE4AP27815 886 aa16.44■□□□□ 0.22
PHGDH-201ENST00000369407 TCOF1Q13428 1488 aaKnown RBP16.44■□□□□ 0.22
PHGDH-201ENST00000369407 SAMD9Q5K651 1589 aa16.44■□□□□ 0.22
PHGDH-201ENST00000369407 RRP1P56182 461 aaKnown RBP16.43■□□□□ 0.22
PHGDH-201ENST00000369407 ARHGEF11O15085 1522 aa16.43■□□□□ 0.22
PHGDH-201ENST00000369407 KDM2AQ9Y2K7 1162 aa16.42■□□□□ 0.22
PHGDH-201ENST00000369407 PLIN1O60240 522 aa16.42■□□□□ 0.22
PHGDH-201ENST00000369407 UBE2Q2Q8WVN8 375 aa16.42■□□□□ 0.22
PHGDH-201ENST00000369407 ZNF777Q9ULD5 760 aaPredicted RBP16.4■□□□□ 0.22
PHGDH-201ENST00000369407 RCAN3Q9UKA8 241 aa16.4■□□□□ 0.22
PHGDH-201ENST00000369407 CDCA7LQ96GN5 454 aa16.39■□□□□ 0.21
PHGDH-201ENST00000369407 BCORL1Q5H9F3 1711 aa16.39■□□□□ 0.21
PHGDH-201ENST00000369407 SLC4A3P48751 1232 aa16.39■□□□□ 0.21
PHGDH-201ENST00000369407 GAPVD1Q14C86 1478 aa16.39■□□□□ 0.21
PHGDH-201ENST00000369407 EPRSP07814 1512 aaKnown RBP16.39■□□□□ 0.21
PHGDH-201ENST00000369407 DAPK1P53355 1430 aa16.38■□□□□ 0.21
PHGDH-201ENST00000369407 PKD2Q13563 968 aa16.38■□□□□ 0.21
PHGDH-201ENST00000369407 CARD11Q9BXL7 1154 aa16.38■□□□□ 0.21
PHGDH-201ENST00000369407 ABCC5O15440 1437 aa16.37■□□□□ 0.21
PHGDH-201ENST00000369407 BACH2Q9BYV9 841 aa16.37■□□□□ 0.21
PHGDH-201ENST00000369407 TCERG1O14776 1098 aaKnown RBP16.36■□□□□ 0.21
PHGDH-201ENST00000369407 THOC2Q8NI27 1593 aaKnown RBP16.36■□□□□ 0.21
PHGDH-201ENST00000369407 ST20-MTHFSA0A0A6YYL1 179 aa16.36■□□□□ 0.21
PHGDH-201ENST00000369407 URB2Q14146 1524 aaKnown RBP16.35■□□□□ 0.21
PHGDH-201ENST00000369407 MIA2Q96PC5 1412 aa16.34■□□□□ 0.21
PHGDH-201ENST00000369407 BRPF3Q9ULD4 1205 aa16.33■□□□□ 0.21
PHGDH-201ENST00000369407 ABCA5Q8WWZ7 1642 aa16.33■□□□□ 0.2
PHGDH-201ENST00000369407 PZPP20742 1482 aa16.3■□□□□ 0.2
PHGDH-201ENST00000369407 MYBBP1AQ9BQG0 1328 aaKnown RBP16.3■□□□□ 0.2
PHGDH-201ENST00000369407 CRBNQ96SW2 442 aa16.3■□□□□ 0.2
PHGDH-201ENST00000369407 KIF15Q9NS87 1388 aa16.29■□□□□ 0.2
PHGDH-201ENST00000369407 ROCK1Q13464 1354 aa16.29■□□□□ 0.2
PHGDH-201ENST00000369407 LRPPRCP42704 1394 aaKnown RBP16.28■□□□□ 0.2
PHGDH-201ENST00000369407 LAMC3Q9Y6N6 1575 aa16.28■□□□□ 0.2
PHGDH-201ENST00000369407 CC2D1BQ5T0F9 858 aaKnown RBP16.28■□□□□ 0.2
PHGDH-201ENST00000369407 DCAF11Q8TEB1 546 aa16.28■□□□□ 0.2
PHGDH-201ENST00000369407 CFDP1Q9UEE9 299 aaPredicted RBP16.28■□□□□ 0.2
PHGDH-201ENST00000369407 POLR1AO95602 1720 aaPredicted RBP16.27■□□□□ 0.2
PHGDH-201ENST00000369407 C20orf194Q5TEA3 1177 aa16.26■□□□□ 0.19
PHGDH-201ENST00000369407 PPM1GO15355 546 aaPredicted RBP16.25■□□□□ 0.19
PHGDH-201ENST00000369407 PKNOX2Q96KN3 472 aa16.25■□□□□ 0.19
PHGDH-201ENST00000369407 KIAA1107Q9UPP5 1409 aa16.25■□□□□ 0.19
PHGDH-201ENST00000369407 BRD4O60885 1362 aaPredicted RBP16.25■□□□□ 0.19
PHGDH-201ENST00000369407 MBD5Q9P267 1494 aa16.25■□□□□ 0.19
PHGDH-201ENST00000369407 RALBP1Q15311 655 aa16.24■□□□□ 0.19
PHGDH-201ENST00000369407 USP35Q9P2H5 1018 aa16.24■□□□□ 0.19
PHGDH-201ENST00000369407 MS4A1P11836 297 aa16.23■□□□□ 0.19
PHGDH-201ENST00000369407 KDM5CP41229 1560 aa16.23■□□□□ 0.19
PHGDH-201ENST00000369407 NFKBIBQ15653 356 aa16.23■□□□□ 0.19
PHGDH-201ENST00000369407 ROCK2O75116 1388 aaKnown RBP16.22■□□□□ 0.19
PHGDH-201ENST00000369407 NLRP13Q86W25 1043 aa16.22■□□□□ 0.19
PHGDH-201ENST00000369407 ARID4BQ4LE39 1312 aaPredicted RBP16.21■□□□□ 0.19
PHGDH-201ENST00000369407 WASHC2CQ9Y4E1 1318 aa16.21■□□□□ 0.19
PHGDH-201ENST00000369407 DNMT1P26358 1616 aaKnown RBP16.21■□□□□ 0.19
PHGDH-201ENST00000369407 WDR62O43379 1518 aa16.21■□□□□ 0.19
PHGDH-201ENST00000369407 GSE1Q14687 1217 aa16.21■□□□□ 0.19
PHGDH-201ENST00000369407 PRG4Q92954 1404 aaPredicted RBP16.2■□□□□ 0.18
PHGDH-201ENST00000369407 PDS5BQ9NTI5 1447 aa16.2■□□□□ 0.18
PHGDH-201ENST00000369407 RGL3Q3MIN7 710 aa16.2■□□□□ 0.18
PHGDH-201ENST00000369407 FRAT1Q92837 279 aaPredicted RBP16.2■□□□□ 0.18
PHGDH-201ENST00000369407 NUP155O75694 1391 aa16.2■□□□□ 0.18
PHGDH-201ENST00000369407 DAXXQ9UER7 740 aaPredicted RBP16.19■□□□□ 0.18
PHGDH-201ENST00000369407 IQGAP2Q13576 1575 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms