RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 RSPH4AQ5TD94 716 aa19.6■□□□□ 0.73
COL17A1-201ENST00000353479 U2SURPO15042 1029 aaKnown RBP19.59■□□□□ 0.73
COL17A1-201ENST00000353479 SOX12O15370 315 aa19.58■□□□□ 0.73
COL17A1-201ENST00000353479 WASHC2CQ9Y4E1 1318 aa19.56■□□□□ 0.72
COL17A1-201ENST00000353479 ARXQ96QS3 562 aa19.56■□□□□ 0.72
COL17A1-201ENST00000353479 ROCK2O75116 1388 aaKnown RBP19.55■□□□□ 0.72
COL17A1-201ENST00000353479 CC2D2AQ9P2K1 1620 aa19.54■□□□□ 0.72
COL17A1-201ENST00000353479 NESP48681 1621 aa19.53■□□□□ 0.72
COL17A1-201ENST00000353479 MORC1Q86VD1 984 aa19.52■□□□□ 0.71
COL17A1-201ENST00000353479 NUTM2DQ5VT03 806 aaPredicted RBP19.51■□□□□ 0.71
COL17A1-201ENST00000353479 SUPT16HQ9Y5B9 1047 aaKnown RBP19.5■□□□□ 0.71
COL17A1-201ENST00000353479 FTSJ3Q8IY81 847 aaKnown RBP19.49■□□□□ 0.71
COL17A1-201ENST00000353479 CFTRP13569 1480 aa19.48■□□□□ 0.71
COL17A1-201ENST00000353479 L3MBTL2Q969R5 705 aa19.47■□□□□ 0.71
COL17A1-201ENST00000353479 HDGFL2Q7Z4V5 671 aaPredicted RBP19.46■□□□□ 0.71
COL17A1-201ENST00000353479 FRAT1Q92837 279 aaPredicted RBP19.43■□□□□ 0.7
COL17A1-201ENST00000353479 PNNQ9H307 717 aaKnown RBP19.43■□□□□ 0.7
COL17A1-201ENST00000353479 GRIN2BQ13224 1484 aa19.41■□□□□ 0.7
COL17A1-201ENST00000353479 PAK3O75914 559 aaPredicted RBP19.41■□□□□ 0.7
COL17A1-201ENST00000353479 EID1Q9Y6B2 187 aa19.4■□□□□ 0.7
COL17A1-201ENST00000353479 KTN1Q86UP2 1357 aaKnown RBP19.4■□□□□ 0.7
COL17A1-201ENST00000353479 MRC2Q9UBG0 1479 aa19.4■□□□□ 0.7
COL17A1-201ENST00000353479 HMGXB3Q12766 1538 aa19.38■□□□□ 0.69
COL17A1-201ENST00000353479 EIF3AQ14152 1382 aaKnown RBP19.38■□□□□ 0.69
COL17A1-201ENST00000353479 SYNJ1O43426 1573 aa19.38■□□□□ 0.69
COL17A1-201ENST00000353479 PRDM2Q13029 1718 aa19.37■□□□□ 0.69
COL17A1-201ENST00000353479 FAM69CQ0P6D2 419 aa19.35■□□□□ 0.69
COL17A1-201ENST00000353479 CCDC144AA2RUR9 1427 aa19.34■□□□□ 0.69
COL17A1-201ENST00000353479 CCER2I3L3R5 266 aa19.33■□□□□ 0.69
COL17A1-201ENST00000353479 ZNF644Q9H582 1327 aaPredicted RBP19.33■□□□□ 0.68
COL17A1-201ENST00000353479 TRAK1Q9UPV9 953 aa19.31■□□□□ 0.68
COL17A1-201ENST00000353479 TOPBP1Q92547 1522 aa19.31■□□□□ 0.68
COL17A1-201ENST00000353479 KIF21BO75037 1637 aa19.31■□□□□ 0.68
COL17A1-201ENST00000353479 IFT140Q96RY7 1462 aa19.3■□□□□ 0.68
COL17A1-201ENST00000353479 DHX57Q6P158 1386 aaKnown RBP19.3■□□□□ 0.68
COL17A1-201ENST00000353479 ANP32BQ92688 251 aaKnown RBP19.29■□□□□ 0.68
COL17A1-201ENST00000353479 U2AF1L5P0DN76 240 aaPredicted RBP19.28■□□□□ 0.68
COL17A1-201ENST00000353479 U2AF1Q01081 240 aaKnown RBP eCLIP19.28■□□□□ 0.68
COL17A1-201ENST00000353479 MYOM3Q5VTT5 1437 aa19.28■□□□□ 0.68
COL17A1-201ENST00000353479 RTF1Q92541 710 aaKnown RBP19.28■□□□□ 0.68
COL17A1-201ENST00000353479 NUTM2FA1L443 756 aa19.28■□□□□ 0.68
COL17A1-201ENST00000353479 NPHP1O15259 732 aa19.27■□□□□ 0.68
COL17A1-201ENST00000353479 RALBP1Q15311 655 aa19.27■□□□□ 0.68
COL17A1-201ENST00000353479 TERF2IPQ9NYB0 399 aa19.27■□□□□ 0.67
COL17A1-201ENST00000353479 PRG4Q92954 1404 aaPredicted RBP19.26■□□□□ 0.67
COL17A1-201ENST00000353479 CUX1P39880 1505 aa19.26■□□□□ 0.67
COL17A1-201ENST00000353479 POLA1P09884 1462 aaPredicted RBP19.26■□□□□ 0.67
COL17A1-201ENST00000353479 FGD6Q6ZV73 1430 aa19.26■□□□□ 0.67
COL17A1-201ENST00000353479 CSB-PGBD3P0DP91 1061 aa19.25■□□□□ 0.67
COL17A1-201ENST00000353479 MS4A1P11836 297 aa19.25■□□□□ 0.67
COL17A1-201ENST00000353479 BICRAQ9NZM4 1560 aa19.24■□□□□ 0.67
COL17A1-201ENST00000353479 NBR1Q14596 966 aa19.24■□□□□ 0.67
COL17A1-201ENST00000353479 NGDNQ8NEJ9 315 aaKnown RBP19.24■□□□□ 0.67
COL17A1-201ENST00000353479 RGS3P49796 1198 aa19.24■□□□□ 0.67
COL17A1-201ENST00000353479 CASKIN1Q8WXD9 1431 aa19.24■□□□□ 0.67
COL17A1-201ENST00000353479 PPP4R2Q9NY27 417 aa19.23■□□□□ 0.67
COL17A1-201ENST00000353479 PHLDB1Q86UU1 1377 aa19.23■□□□□ 0.67
COL17A1-201ENST00000353479 TOP2BQ02880 1626 aa19.22■□□□□ 0.67
COL17A1-201ENST00000353479 CHMP4BQ9H444 224 aaKnown RBP19.22■□□□□ 0.67
COL17A1-201ENST00000353479 LRRC9Q6ZRR7 1453 aa19.22■□□□□ 0.67
COL17A1-201ENST00000353479 ST20-MTHFSA0A0A6YYL1 179 aa19.22■□□□□ 0.67
COL17A1-201ENST00000353479 ERICH3Q5RHP9 1530 aa19.22■□□□□ 0.67
COL17A1-201ENST00000353479 OS9Q13438 667 aaPredicted RBP19.22■□□□□ 0.67
COL17A1-201ENST00000353479 UACAQ9BZF9 1416 aa19.21■□□□□ 0.67
COL17A1-201ENST00000353479 VGFO15240 615 aaPredicted RBP19.21■□□□□ 0.67
COL17A1-201ENST00000353479 CASC1Q6TDU7 716 aa19.21■□□□□ 0.67
COL17A1-201ENST00000353479 KIF15Q9NS87 1388 aa19.2■□□□□ 0.66
COL17A1-201ENST00000353479 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.2■□□□□ 0.66
COL17A1-201ENST00000353479 SNAPC4Q5SXM2 1469 aa19.2■□□□□ 0.66
COL17A1-201ENST00000353479 BECN1Q14457 450 aa19.19■□□□□ 0.66
COL17A1-201ENST00000353479 NCOA2Q15596 1464 aa19.19■□□□□ 0.66
COL17A1-201ENST00000353479 DNAJC5BQ9UF47 199 aa19.18■□□□□ 0.66
COL17A1-201ENST00000353479 ARAP1Q96P48 1450 aa19.17■□□□□ 0.66
COL17A1-201ENST00000353479 SYNJ2O15056 1496 aa19.17■□□□□ 0.66
COL17A1-201ENST00000353479 B4GALNT3Q6L9W6 998 aa19.16■□□□□ 0.66
COL17A1-201ENST00000353479 DNMBPQ6XZF7 1577 aa19.16■□□□□ 0.66
COL17A1-201ENST00000353479 DDRGK1Q96HY6 314 aa19.16■□□□□ 0.66
COL17A1-201ENST00000353479 FYCO1Q9BQS8 1478 aa19.15■□□□□ 0.66
COL17A1-201ENST00000353479 ARHGAP5Q13017 1502 aa19.15■□□□□ 0.66
COL17A1-201ENST00000353479 AFAP1Q8N556 730 aa19.14■□□□□ 0.65
COL17A1-201ENST00000353479 PANK3Q9H999 370 aa19.12■□□□□ 0.65
COL17A1-201ENST00000353479 CCDC146Q8IYE0 955 aa19.11■□□□□ 0.65
COL17A1-201ENST00000353479 PRXQ9BXM0 1461 aa19.11■□□□□ 0.65
COL17A1-201ENST00000353479 AMPHP49418 695 aa19.11■□□□□ 0.65
COL17A1-201ENST00000353479 CALD1Q05682 793 aaKnown RBP19.11■□□□□ 0.65
COL17A1-201ENST00000353479 MINK1Q8N4C8 1332 aaPredicted RBP19.11■□□□□ 0.65
COL17A1-201ENST00000353479 NLRP13Q86W25 1043 aa19.1■□□□□ 0.65
COL17A1-201ENST00000353479 ANKRD50Q9ULJ7 1429 aa19.1■□□□□ 0.65
COL17A1-201ENST00000353479 LTV1Q96GA3 475 aaPredicted RBP19.1■□□□□ 0.65
COL17A1-201ENST00000353479 CCDC9Q9Y3X0 531 aaKnown RBP19.09■□□□□ 0.65
COL17A1-201ENST00000353479 USP47Q96K76 1375 aa19.09■□□□□ 0.65
COL17A1-201ENST00000353479 EVC2Q86UK5 1308 aa19.08■□□□□ 0.64
COL17A1-201ENST00000353479 ZNF330Q9Y3S2 320 aaPredicted RBP19.07■□□□□ 0.64
COL17A1-201ENST00000353479 EFCAB5A4FU69 1503 aa19.07■□□□□ 0.64
COL17A1-201ENST00000353479 IPO8O15397 1037 aaKnown RBP19.06■□□□□ 0.64
COL17A1-201ENST00000353479 RCAN3Q9UKA8 241 aa19.06■□□□□ 0.64
COL17A1-201ENST00000353479 LAMC3Q9Y6N6 1575 aa19.05■□□□□ 0.64
COL17A1-201ENST00000353479 EIF5BO60841 1220 aaKnown RBP19.05■□□□□ 0.64
COL17A1-201ENST00000353479 GOLGA2Q08379 1002 aa19.04■□□□□ 0.64
COL17A1-201ENST00000353479 NCLP19338 710 aaKnown RBP19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms