RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 GAPVD1Q14C86 1478 aa15.96■□□□□ 0.15
USP1-201ENST00000339950 MSH5O43196 834 aa15.96■□□□□ 0.15
USP1-201ENST00000339950 PCF11O94913 1555 aaKnown RBP15.96■□□□□ 0.14
USP1-201ENST00000339950 CANXP27824 592 aaKnown RBP15.95■□□□□ 0.14
USP1-201ENST00000339950 MYOM3Q5VTT5 1437 aa15.95■□□□□ 0.14
USP1-201ENST00000339950 UACAQ9BZF9 1416 aa15.94■□□□□ 0.14
USP1-201ENST00000339950 RGS3P49796 1198 aa15.93■□□□□ 0.14
USP1-201ENST00000339950 CASKIN1Q8WXD9 1431 aa15.93■□□□□ 0.14
USP1-201ENST00000339950 NAIPQ13075 1403 aa15.92■□□□□ 0.14
USP1-201ENST00000339950 JPH4Q96JJ6 628 aa15.92■□□□□ 0.14
USP1-201ENST00000339950 BIVM-ERCC5R4GMW8 1640 aa15.92■□□□□ 0.14
USP1-201ENST00000339950 TOPBP1Q92547 1522 aa15.91■□□□□ 0.14
USP1-201ENST00000339950 CCDC7Q96M83 1385 aa15.9■□□□□ 0.14
USP1-201ENST00000339950 EXOC6Q8TAG9 804 aa15.89■□□□□ 0.13
USP1-201ENST00000339950 WDR43Q15061 677 aaKnown RBP eCLIP15.89■□□□□ 0.13
USP1-201ENST00000339950 CDK13Q14004 1512 aaKnown RBP15.89■□□□□ 0.13
USP1-201ENST00000339950 AKNAQ7Z591 1439 aa15.89■□□□□ 0.13
USP1-201ENST00000339950 CDCA7LQ96GN5 454 aa15.88■□□□□ 0.13
USP1-201ENST00000339950 PLPPR3Q6T4P5 718 aa15.88■□□□□ 0.13
USP1-201ENST00000339950 SLC4A3P48751 1232 aa15.87■□□□□ 0.13
USP1-201ENST00000339950 NOP58Q9Y2X3 529 aaKnown RBP15.87■□□□□ 0.13
USP1-201ENST00000339950 CC2D2AQ9P2K1 1620 aa15.87■□□□□ 0.13
USP1-201ENST00000339950 SAFB2Q14151 953 aaKnown RBP eCLIP15.87■□□□□ 0.13
USP1-201ENST00000339950 NBPF1Q3BBV0 1214 aa15.87■□□□□ 0.13
USP1-201ENST00000339950 CCDC146Q8IYE0 955 aa15.87■□□□□ 0.13
USP1-201ENST00000339950 ERCC6Q03468 1493 aa15.87■□□□□ 0.13
USP1-201ENST00000339950 USP47Q96K76 1375 aa15.86■□□□□ 0.13
USP1-201ENST00000339950 NUTM2DQ5VT03 806 aaPredicted RBP15.86■□□□□ 0.13
USP1-201ENST00000339950 PAK3O75914 559 aaPredicted RBP15.86■□□□□ 0.13
USP1-201ENST00000339950 DEKP35659 375 aaKnown RBP15.86■□□□□ 0.13
USP1-201ENST00000339950 NUDCQ9Y266 331 aa15.84■□□□□ 0.13
USP1-201ENST00000339950 HMGXB3Q12766 1538 aa15.84■□□□□ 0.13
USP1-201ENST00000339950 ROCK2O75116 1388 aaKnown RBP15.84■□□□□ 0.13
USP1-201ENST00000339950 PRG4Q92954 1404 aaPredicted RBP15.83■□□□□ 0.13
USP1-201ENST00000339950 HFM1A2PYH4 1435 aa15.83■□□□□ 0.12
USP1-201ENST00000339950 RCAN3Q9UKA8 241 aa15.82■□□□□ 0.12
USP1-201ENST00000339950 KNSTRNQ9Y448 316 aa15.81■□□□□ 0.12
USP1-201ENST00000339950 FYCO1Q9BQS8 1478 aa15.81■□□□□ 0.12
USP1-201ENST00000339950 FRAT1Q92837 279 aaPredicted RBP15.8■□□□□ 0.12
USP1-201ENST00000339950 PANK3Q9H999 370 aa15.8■□□□□ 0.12
USP1-201ENST00000339950 ZBED9Q6R2W3 1325 aa15.79■□□□□ 0.12
USP1-201ENST00000339950 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.78■□□□□ 0.12
USP1-201ENST00000339950 CNTLNQ9NXG0 1405 aa15.77■□□□□ 0.12
USP1-201ENST00000339950 NEFMP07197 916 aa15.77■□□□□ 0.11
USP1-201ENST00000339950 ANKRD30AQ9BXX3 1397 aa15.75■□□□□ 0.11
USP1-201ENST00000339950 PRDM2Q13029 1718 aa15.75■□□□□ 0.11
USP1-201ENST00000339950 RRP7AQ9Y3A4 280 aaKnown RBP15.74■□□□□ 0.11
USP1-201ENST00000339950 URB2Q14146 1524 aaKnown RBP15.73■□□□□ 0.11
USP1-201ENST00000339950 PPM1GO15355 546 aaPredicted RBP15.73■□□□□ 0.11
USP1-201ENST00000339950 SPRYD3Q8NCJ5 442 aa15.72■□□□□ 0.11
USP1-201ENST00000339950 PLEKHG5O94827 1062 aa15.72■□□□□ 0.11
USP1-201ENST00000339950 BCL2L13Q9BXK5 485 aa15.71■□□□□ 0.11
USP1-201ENST00000339950 CRBNQ96SW2 442 aa15.71■□□□□ 0.11
USP1-201ENST00000339950 FANCIQ9NVI1 1328 aa15.7■□□□□ 0.1
USP1-201ENST00000339950 TMF1P82094 1093 aa15.7■□□□□ 0.1
USP1-201ENST00000339950 GGT6Q6P531 493 aa15.7■□□□□ 0.1
USP1-201ENST00000339950 MAP3K1Q13233 1512 aa15.69■□□□□ 0.1
USP1-201ENST00000339950 ABCA10Q8WWZ4 1543 aa15.69■□□□□ 0.1
USP1-201ENST00000339950 CLUAP1Q96AJ1 413 aa15.69■□□□□ 0.1
USP1-201ENST00000339950 PNISRQ8TF01 805 aaKnown RBP15.69■□□□□ 0.1
USP1-201ENST00000339950 SLC24A1O60721 1099 aa15.68■□□□□ 0.1
USP1-201ENST00000339950 KTN1Q86UP2 1357 aaKnown RBP15.68■□□□□ 0.1
USP1-201ENST00000339950 ZNF608Q9ULD9 1512 aaPredicted RBP15.68■□□□□ 0.1
USP1-201ENST00000339950 NLRP13Q86W25 1043 aa15.67■□□□□ 0.1
USP1-201ENST00000339950 RRP1P56182 461 aaKnown RBP15.67■□□□□ 0.1
USP1-201ENST00000339950 STK26Q9P289 416 aa15.67■□□□□ 0.1
USP1-201ENST00000339950 EPRSP07814 1512 aaKnown RBP15.66■□□□□ 0.1
USP1-201ENST00000339950 ANKRD30BQ9BXX2 1392 aa15.66■□□□□ 0.1
USP1-201ENST00000339950 KIF3BO15066 747 aa15.66■□□□□ 0.1
USP1-201ENST00000339950 ANKRD50Q9ULJ7 1429 aa15.66■□□□□ 0.1
USP1-201ENST00000339950 PLB1Q6P1J6 1458 aa15.65■□□□□ 0.1
USP1-201ENST00000339950 ERICH6BQ5W0A0 696 aa15.65■□□□□ 0.1
USP1-201ENST00000339950 AFAP1Q8N556 730 aa15.65■□□□□ 0.1
USP1-201ENST00000339950 ADAMTS8Q9UP79 889 aa15.64■□□□□ 0.09
USP1-201ENST00000339950 MYBBP1AQ9BQG0 1328 aaKnown RBP15.64■□□□□ 0.09
USP1-201ENST00000339950 DNMBPQ6XZF7 1577 aa15.64■□□□□ 0.09
USP1-201ENST00000339950 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.64■□□□□ 0.09
USP1-201ENST00000339950 IPO9Q96P70 1041 aaKnown RBP15.64■□□□□ 0.09
USP1-201ENST00000339950 KIF15Q9NS87 1388 aa15.64■□□□□ 0.09
USP1-201ENST00000339950 PTPN23Q9H3S7 1636 aa15.63■□□□□ 0.09
USP1-201ENST00000339950 PDE4AP27815 886 aa15.63■□□□□ 0.09
USP1-201ENST00000339950 ABCC5O15440 1437 aa15.63■□□□□ 0.09
USP1-201ENST00000339950 DAPK1P53355 1430 aa15.63■□□□□ 0.09
USP1-201ENST00000339950 TRAK1Q9UPV9 953 aa15.63■□□□□ 0.09
USP1-201ENST00000339950 APAF1O14727 1248 aa15.62■□□□□ 0.09
USP1-201ENST00000339950 C20orf194Q5TEA3 1177 aa15.62■□□□□ 0.09
USP1-201ENST00000339950 EFCAB5A4FU69 1503 aa15.62■□□□□ 0.09
USP1-201ENST00000339950 U2SURPO15042 1029 aaKnown RBP15.61■□□□□ 0.09
USP1-201ENST00000339950 RALBP1Q15311 655 aa15.61■□□□□ 0.09
USP1-201ENST00000339950 THOC2Q8NI27 1593 aaKnown RBP15.61■□□□□ 0.09
USP1-201ENST00000339950 CARMIL2Q6F5E8 1435 aa15.6■□□□□ 0.09
USP1-201ENST00000339950 STAG3Q9UJ98 1225 aa15.6■□□□□ 0.09
USP1-201ENST00000339950 SLKQ9H2G2 1235 aaPredicted RBP15.59■□□□□ 0.09
USP1-201ENST00000339950 CCDC144AA2RUR9 1427 aa15.58■□□□□ 0.08
USP1-201ENST00000339950 SOX12O15370 315 aa15.57■□□□□ 0.08
USP1-201ENST00000339950 PTPRGP23470 1445 aa15.56■□□□□ 0.08
USP1-201ENST00000339950 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.56■□□□□ 0.08
USP1-201ENST00000339950 SNAPC4Q5SXM2 1469 aa15.56■□□□□ 0.08
USP1-201ENST00000339950 TMEM132EQ6IEE7 984 aa15.56■□□□□ 0.08
USP1-201ENST00000339950 EHBP1L1Q8N3D4 1523 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms