RNA–Protein interactions for RNA: ENST00000339861.8

SEMA4D-201, Transcript of semaphorin 4D, humanhuman

TSL 5 BASIC

Gene SEMA4D, Length 4,258 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-201ENST00000339861 HMGXB3Q12766 1538 aa14.72□□□□□ -0.05
SEMA4D-201ENST00000339861 CCDC7Q96M83 1385 aa14.71□□□□□ -0.05
SEMA4D-201ENST00000339861 BIVM-ERCC5R4GMW8 1640 aa14.71□□□□□ -0.06
SEMA4D-201ENST00000339861 FYCO1Q9BQS8 1478 aa14.71□□□□□ -0.06
SEMA4D-201ENST00000339861 NUDCQ9Y266 331 aa14.7□□□□□ -0.06
SEMA4D-201ENST00000339861 DEKP35659 375 aaKnown RBP14.69□□□□□ -0.06
SEMA4D-201ENST00000339861 NAIPQ13075 1403 aa14.69□□□□□ -0.06
SEMA4D-201ENST00000339861 NEUROD2Q15784 382 aa14.69□□□□□ -0.06
SEMA4D-201ENST00000339861 RTN4Q9NQC3 1192 aaKnown RBP14.69□□□□□ -0.06
SEMA4D-201ENST00000339861 HFM1A2PYH4 1435 aa14.68□□□□□ -0.06
SEMA4D-201ENST00000339861 PTPRKQ15262 1439 aa14.68□□□□□ -0.06
SEMA4D-201ENST00000339861 TOPBP1Q92547 1522 aa14.68□□□□□ -0.06
SEMA4D-201ENST00000339861 TNNT2P45379 298 aaPredicted RBP14.68□□□□□ -0.06
SEMA4D-201ENST00000339861 RGS3P49796 1198 aa14.68□□□□□ -0.06
SEMA4D-201ENST00000339861 PLIN1O60240 522 aa14.67□□□□□ -0.06
SEMA4D-201ENST00000339861 ZBED9Q6R2W3 1325 aa14.67□□□□□ -0.06
SEMA4D-201ENST00000339861 ARXQ96QS3 562 aa14.67□□□□□ -0.06
SEMA4D-201ENST00000339861 USP47Q96K76 1375 aa14.67□□□□□ -0.06
SEMA4D-201ENST00000339861 KNSTRNQ9Y448 316 aa14.66□□□□□ -0.06
SEMA4D-201ENST00000339861 ROCK2O75116 1388 aaKnown RBP14.65□□□□□ -0.06
SEMA4D-201ENST00000339861 RCAN3Q9UKA8 241 aa14.65□□□□□ -0.06
SEMA4D-201ENST00000339861 MSH5O43196 834 aa14.65□□□□□ -0.06
SEMA4D-201ENST00000339861 CNTLNQ9NXG0 1405 aa14.64□□□□□ -0.07
SEMA4D-201ENST00000339861 JPH4Q96JJ6 628 aa14.64□□□□□ -0.07
SEMA4D-201ENST00000339861 ERCC6Q03468 1493 aa14.64□□□□□ -0.07
SEMA4D-201ENST00000339861 EXOC6Q8TAG9 804 aa14.63□□□□□ -0.07
SEMA4D-201ENST00000339861 ANKRD30AQ9BXX3 1397 aa14.62□□□□□ -0.07
SEMA4D-201ENST00000339861 NEFMP07197 916 aa14.62□□□□□ -0.07
SEMA4D-201ENST00000339861 CC2D2AQ9P2K1 1620 aa14.61□□□□□ -0.07
SEMA4D-201ENST00000339861 ERICH6BQ5W0A0 696 aa14.61□□□□□ -0.07
SEMA4D-201ENST00000339861 AKNAQ7Z591 1439 aa14.61□□□□□ -0.07
SEMA4D-201ENST00000339861 CDK13Q14004 1512 aaKnown RBP14.6□□□□□ -0.07
SEMA4D-201ENST00000339861 KTN1Q86UP2 1357 aaKnown RBP14.57□□□□□ -0.08
SEMA4D-201ENST00000339861 TMF1P82094 1093 aa14.57□□□□□ -0.08
SEMA4D-201ENST00000339861 FANCIQ9NVI1 1328 aa14.56□□□□□ -0.08
SEMA4D-201ENST00000339861 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.56□□□□□ -0.08
SEMA4D-201ENST00000339861 FRAT1Q92837 279 aaPredicted RBP14.56□□□□□ -0.08
SEMA4D-201ENST00000339861 CCDC146Q8IYE0 955 aa14.56□□□□□ -0.08
SEMA4D-201ENST00000339861 PAK3O75914 559 aaPredicted RBP14.55□□□□□ -0.08
SEMA4D-201ENST00000339861 PANK3Q9H999 370 aa14.55□□□□□ -0.08
SEMA4D-201ENST00000339861 EFCAB5A4FU69 1503 aa14.55□□□□□ -0.08
SEMA4D-201ENST00000339861 CDCA7LQ96GN5 454 aa14.55□□□□□ -0.08
SEMA4D-201ENST00000339861 ABCA10Q8WWZ4 1543 aa14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 RALBP1Q15311 655 aa14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 NLRP13Q86W25 1043 aa14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 PRDM2Q13029 1718 aa14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 SLC4A3P48751 1232 aa14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 IPO9Q96P70 1041 aaKnown RBP14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 PRG4Q92954 1404 aaPredicted RBP14.54□□□□□ -0.08
SEMA4D-201ENST00000339861 EIF5BO60841 1220 aaKnown RBP14.53□□□□□ -0.08
SEMA4D-201ENST00000339861 MAP3K1Q13233 1512 aa14.53□□□□□ -0.08
SEMA4D-201ENST00000339861 NBPF1Q3BBV0 1214 aa14.52□□□□□ -0.08
SEMA4D-201ENST00000339861 MYBBP1AQ9BQG0 1328 aaKnown RBP14.52□□□□□ -0.08
SEMA4D-201ENST00000339861 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.52□□□□□ -0.09
SEMA4D-201ENST00000339861 DNMBPQ6XZF7 1577 aa14.52□□□□□ -0.09
SEMA4D-201ENST00000339861 RRP1P56182 461 aaKnown RBP14.51□□□□□ -0.09
SEMA4D-201ENST00000339861 CARMIL2Q6F5E8 1435 aa14.51□□□□□ -0.09
SEMA4D-201ENST00000339861 SKAP1Q86WV1 359 aa14.51□□□□□ -0.09
SEMA4D-201ENST00000339861 KIF15Q9NS87 1388 aa14.5□□□□□ -0.09
SEMA4D-201ENST00000339861 SAFB2Q14151 953 aaKnown RBP eCLIP14.49□□□□□ -0.09
SEMA4D-201ENST00000339861 PTPN23Q9H3S7 1636 aa14.49□□□□□ -0.09
SEMA4D-201ENST00000339861 CRBNQ96SW2 442 aa14.48□□□□□ -0.09
SEMA4D-201ENST00000339861 EHBP1L1Q8N3D4 1523 aa14.48□□□□□ -0.09
SEMA4D-201ENST00000339861 EPRSP07814 1512 aaKnown RBP14.48□□□□□ -0.09
SEMA4D-201ENST00000339861 PNISRQ8TF01 805 aaKnown RBP14.48□□□□□ -0.09
SEMA4D-201ENST00000339861 ANKRD50Q9ULJ7 1429 aa14.48□□□□□ -0.09
SEMA4D-201ENST00000339861 PDE4AP27815 886 aa14.47□□□□□ -0.09
SEMA4D-201ENST00000339861 ANKRD30BQ9BXX2 1392 aa14.47□□□□□ -0.09
SEMA4D-201ENST00000339861 URB2Q14146 1524 aaKnown RBP14.46□□□□□ -0.09
SEMA4D-201ENST00000339861 DAPK1P53355 1430 aa14.46□□□□□ -0.09
SEMA4D-201ENST00000339861 SUPT6HQ7KZ85 1726 aaKnown RBP14.46□□□□□ -0.1
SEMA4D-201ENST00000339861 TCERG1O14776 1098 aaKnown RBP14.44□□□□□ -0.1
SEMA4D-201ENST00000339861 CCDC144AA2RUR9 1427 aa14.44□□□□□ -0.1
SEMA4D-201ENST00000339861 NUTM2DQ5VT03 806 aaPredicted RBP14.44□□□□□ -0.1
SEMA4D-201ENST00000339861 DDRGK1Q96HY6 314 aa14.44□□□□□ -0.1
SEMA4D-201ENST00000339861 PPM1GO15355 546 aaPredicted RBP14.43□□□□□ -0.1
SEMA4D-201ENST00000339861 UPF2Q9HAU5 1272 aaKnown RBP14.43□□□□□ -0.1
SEMA4D-201ENST00000339861 CDCA8Q53HL2 280 aa14.43□□□□□ -0.1
SEMA4D-201ENST00000339861 SPRYD3Q8NCJ5 442 aa14.42□□□□□ -0.1
SEMA4D-201ENST00000339861 RRP7AQ9Y3A4 280 aaKnown RBP14.42□□□□□ -0.1
SEMA4D-201ENST00000339861 ABCC5O15440 1437 aa14.42□□□□□ -0.1
SEMA4D-201ENST00000339861 SLC24A1O60721 1099 aa14.41□□□□□ -0.1
SEMA4D-201ENST00000339861 STAG3Q9UJ98 1225 aa14.41□□□□□ -0.1
SEMA4D-201ENST00000339861 MIA2Q96PC5 1412 aa14.41□□□□□ -0.1
SEMA4D-201ENST00000339861 PLPPR3Q6T4P5 718 aa14.4□□□□□ -0.1
SEMA4D-201ENST00000339861 KIF3BO15066 747 aa14.4□□□□□ -0.1
SEMA4D-201ENST00000339861 NCOA1Q15788 1441 aa14.4□□□□□ -0.1
SEMA4D-201ENST00000339861 CLUAP1Q96AJ1 413 aa14.4□□□□□ -0.1
SEMA4D-201ENST00000339861 GGT6Q6P531 493 aa14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 GRIN2BQ13224 1484 aa14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 GOLGA2Q08379 1002 aa14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 BCL2L13Q9BXK5 485 aa14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 ADAMTS8Q9UP79 889 aa14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 NPM1P06748 294 aaKnown RBP eCLIP14.39□□□□□ -0.11
SEMA4D-201ENST00000339861 U2SURPO15042 1029 aaKnown RBP14.38□□□□□ -0.11
SEMA4D-201ENST00000339861 KIAA1107Q9UPP5 1409 aa14.38□□□□□ -0.11
SEMA4D-201ENST00000339861 APAF1O14727 1248 aa14.38□□□□□ -0.11
SEMA4D-201ENST00000339861 SNAPC4Q5SXM2 1469 aa14.38□□□□□ -0.11
SEMA4D-201ENST00000339861 THOC2Q8NI27 1593 aaKnown RBP14.37□□□□□ -0.11
SEMA4D-201ENST00000339861 PTPRGP23470 1445 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms