RNA–Protein interactions for RNA: ENST00000339861.8

SEMA4D-201, Transcript of semaphorin 4D, humanhuman

TSL 5 BASIC

Gene SEMA4D, Length 4,258 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-201ENST00000339861 NISCHQ9Y2I1 1504 aa20.69■□□□□ 0.9
SEMA4D-201ENST00000339861 DCAF8L2P0C7V8 631 aa19.34■□□□□ 0.69
SEMA4D-201ENST00000339861 SHROOM4Q9ULL8 1493 aa19.26■□□□□ 0.67
SEMA4D-201ENST00000339861 SUPT5HO00267 1087 aaKnown RBP19.2■□□□□ 0.66
SEMA4D-201ENST00000339861 EHMT2Q96KQ7 1210 aa18.28■□□□□ 0.52
SEMA4D-201ENST00000339861 PCGF6Q9BYE7 350 aa18.23■□□□□ 0.51
SEMA4D-201ENST00000339861 FAM9AQ8IZU1 332 aaPredicted RBP17.98■□□□□ 0.47
SEMA4D-201ENST00000339861 CHIC1Q5VXU3 224 aa17.92■□□□□ 0.46
SEMA4D-201ENST00000339861 LOC105371045A0A1W2PR82 267 aa17.84■□□□□ 0.45
SEMA4D-201ENST00000339861 PPARGC1BQ86YN6 1023 aaKnown RBP17.75■□□□□ 0.43
SEMA4D-201ENST00000339861 HRCP23327 699 aa17.72■□□□□ 0.43
SEMA4D-201ENST00000339861 TTBK1Q5TCY1 1321 aaPredicted RBP17.66■□□□□ 0.42
SEMA4D-201ENST00000339861 TRIM41Q8WV44 630 aa17.61■□□□□ 0.41
SEMA4D-201ENST00000339861 MYO15BQ96JP2 1530 aa17.38■□□□□ 0.37
SEMA4D-201ENST00000339861 TRIM26Q12899 539 aaPredicted RBP17.38■□□□□ 0.37
SEMA4D-201ENST00000339861 ZCCHC6Q5VYS8 1495 aaKnown RBP17.34■□□□□ 0.37
SEMA4D-201ENST00000339861 RANGAP1P46060 587 aaPredicted RBP17.22■□□□□ 0.35
SEMA4D-201ENST00000339861 CCER1Q8TC90 406 aaPredicted RBP17.22■□□□□ 0.35
SEMA4D-201ENST00000339861 ZEB1P37275 1124 aaPredicted RBP17.14■□□□□ 0.33
SEMA4D-201ENST00000339861 UBTFP17480 764 aaKnown RBP17.06■□□□□ 0.32
SEMA4D-201ENST00000339861 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.05■□□□□ 0.32
SEMA4D-201ENST00000339861 ABCC9O60706 1549 aa16.96■□□□□ 0.31
SEMA4D-201ENST00000339861 APLP2Q06481 763 aa16.93■□□□□ 0.3
SEMA4D-201ENST00000339861 YTHDC1Q96MU7 727 aaKnown RBP16.92■□□□□ 0.3
SEMA4D-201ENST00000339861 CCDC180Q9P1Z9 1646 aa16.9■□□□□ 0.3
SEMA4D-201ENST00000339861 SCRIBQ14160 1630 aa16.84■□□□□ 0.29
SEMA4D-201ENST00000339861 DCAF1Q9Y4B6 1507 aa16.83■□□□□ 0.28
SEMA4D-201ENST00000339861 HNRNPUL2Q1KMD3 747 aaKnown RBP16.79■□□□□ 0.28
SEMA4D-201ENST00000339861 CENPBP07199 599 aaPredicted RBP16.77■□□□□ 0.27
SEMA4D-201ENST00000339861 PABPN1Q86U42 306 aaKnown RBP eCLIP16.73■□□□□ 0.27
SEMA4D-201ENST00000339861 RSF1Q96T23 1441 aaPredicted RBP16.68■□□□□ 0.26
SEMA4D-201ENST00000339861 DIEXFQ68CQ4 756 aaKnown RBP16.67■□□□□ 0.26
SEMA4D-201ENST00000339861 ITGAEP38570 1179 aa16.58■□□□□ 0.24
SEMA4D-201ENST00000339861 ATP1B4Q9UN42 357 aaPredicted RBP16.58■□□□□ 0.24
SEMA4D-201ENST00000339861 PELP1Q8IZL8 1130 aaKnown RBP16.52■□□□□ 0.24
SEMA4D-201ENST00000339861 GTF3C3Q9Y5Q9 886 aa16.51■□□□□ 0.23
SEMA4D-201ENST00000339861 SCAF1Q9H7N4 1312 aaKnown RBP16.5■□□□□ 0.23
SEMA4D-201ENST00000339861 CECR2Q9BXF3 1484 aa16.46■□□□□ 0.23
SEMA4D-201ENST00000339861 CSRNP3Q8WYN3 585 aa16.44■□□□□ 0.22
SEMA4D-201ENST00000339861 RB1CC1Q8TDY2 1594 aa16.42■□□□□ 0.22
SEMA4D-201ENST00000339861 NEUROD1Q13562 356 aa16.41■□□□□ 0.22
SEMA4D-201ENST00000339861 ACIN1Q9UKV3 1341 aaKnown RBP16.4■□□□□ 0.22
SEMA4D-201ENST00000339861 ZNF316A6NFI3 1004 aaPredicted RBP16.32■□□□□ 0.2
SEMA4D-201ENST00000339861 MROH2BQ7Z745 1585 aa16.25■□□□□ 0.19
SEMA4D-201ENST00000339861 CEP162Q5TB80 1403 aa16.18■□□□□ 0.18
SEMA4D-201ENST00000339861 SOGA1O94964 1423 aa16.15■□□□□ 0.18
SEMA4D-201ENST00000339861 MIER1Q8N108 512 aa16.14■□□□□ 0.17
SEMA4D-201ENST00000339861 ABCC8Q09428 1581 aa16.12■□□□□ 0.17
SEMA4D-201ENST00000339861 FAM50AQ14320 339 aaKnown RBP16.11■□□□□ 0.17
SEMA4D-201ENST00000339861 WIZO95785 1651 aa16.1■□□□□ 0.17
SEMA4D-201ENST00000339861 P3H3Q8IVL6 736 aa16.09■□□□□ 0.17
SEMA4D-201ENST00000339861 CCDC88BA6NC98 1476 aa16.08■□□□□ 0.17
SEMA4D-201ENST00000339861 BCANQ96GW7 911 aa16.07■□□□□ 0.16
SEMA4D-201ENST00000339861 NACADO15069 1562 aa16.04■□□□□ 0.16
SEMA4D-201ENST00000339861 CNGB1Q14028 1251 aaPredicted RBP16.03■□□□□ 0.16
SEMA4D-201ENST00000339861 CLIP1P30622 1438 aa16■□□□□ 0.15
SEMA4D-201ENST00000339861 TNIKQ9UKE5 1360 aa15.98■□□□□ 0.15
SEMA4D-201ENST00000339861 NEFLP07196 543 aa15.98■□□□□ 0.15
SEMA4D-201ENST00000339861 WRNQ14191 1432 aaPredicted RBP eCLIP15.96■□□□□ 0.14
SEMA4D-201ENST00000339861 BAZ1AQ9NRL2 1556 aaPredicted RBP15.95■□□□□ 0.14
SEMA4D-201ENST00000339861 RUSC2Q8N2Y8 1516 aa15.94■□□□□ 0.14
SEMA4D-201ENST00000339861 GOLGA3Q08378 1498 aa15.92■□□□□ 0.14
SEMA4D-201ENST00000339861 HIRIP3Q9BW71 556 aaPredicted RBP15.9■□□□□ 0.14
SEMA4D-201ENST00000339861 POLR3GLQ9BT43 218 aa15.87■□□□□ 0.13
SEMA4D-201ENST00000339861 ARID3CA6NKF2 412 aa15.85■□□□□ 0.13
SEMA4D-201ENST00000339861 DDX10Q13206 875 aaKnown RBP15.84■□□□□ 0.13
SEMA4D-201ENST00000339861 EEA1Q15075 1411 aa15.81■□□□□ 0.12
SEMA4D-201ENST00000339861 KANK4Q5T7N3 995 aaPredicted RBP15.78■□□□□ 0.12
SEMA4D-201ENST00000339861 ERICH6Q7L0X2 663 aa15.77■□□□□ 0.12
SEMA4D-201ENST00000339861 CEP164Q9UPV0 1460 aa15.76■□□□□ 0.11
SEMA4D-201ENST00000339861 TRIM52Q96A61 297 aa15.76■□□□□ 0.11
SEMA4D-201ENST00000339861 MYT1Q01538 1121 aa15.75■□□□□ 0.11
SEMA4D-201ENST00000339861 BAZ1BQ9UIG0 1483 aaKnown RBP15.72■□□□□ 0.11
SEMA4D-201ENST00000339861 TOP2AP11388 1531 aaKnown RBP15.71■□□□□ 0.11
SEMA4D-201ENST00000339861 FKBP8Q14318 412 aa15.71■□□□□ 0.11
SEMA4D-201ENST00000339861 ANP32CO43423 234 aa15.7■□□□□ 0.1
SEMA4D-201ENST00000339861 SIN3AQ96ST3 1273 aa15.69■□□□□ 0.1
SEMA4D-201ENST00000339861 VPS8Q8N3P4 1428 aa15.65■□□□□ 0.1
SEMA4D-201ENST00000339861 RAPGEF2Q9Y4G8 1499 aa15.65■□□□□ 0.1
SEMA4D-201ENST00000339861 CHIC2Q9UKJ5 165 aa15.63■□□□□ 0.09
SEMA4D-201ENST00000339861 SMARCA4P51532 1647 aa15.62■□□□□ 0.09
SEMA4D-201ENST00000339861 ZNF326Q5BKZ1 582 aaKnown RBP15.62■□□□□ 0.09
SEMA4D-201ENST00000339861 SMARCA2P51531 1590 aa15.6■□□□□ 0.09
SEMA4D-201ENST00000339861 IRX6P78412 446 aaPredicted RBP15.57■□□□□ 0.08
SEMA4D-201ENST00000339861 KCNH8Q96L42 1107 aa15.57■□□□□ 0.08
SEMA4D-201ENST00000339861 SUPT16HQ9Y5B9 1047 aaKnown RBP15.55■□□□□ 0.08
SEMA4D-201ENST00000339861 TONSLQ96HA7 1378 aa15.54■□□□□ 0.08
SEMA4D-201ENST00000339861 KIF27Q86VH2 1401 aa15.54■□□□□ 0.08
SEMA4D-201ENST00000339861 HNRNPUQ00839 825 aaKnown RBP eCLIP15.53■□□□□ 0.08
SEMA4D-201ENST00000339861 CCNB3Q8WWL7 1395 aa15.52■□□□□ 0.08
SEMA4D-201ENST00000339861 SENP3-EIF4A1A0A087X0R7 540 aa15.52■□□□□ 0.07
SEMA4D-201ENST00000339861 RRP7BPQ9NSQ0 103 aa15.5■□□□□ 0.07
SEMA4D-201ENST00000339861 FBLN2P98095 1184 aa15.46■□□□□ 0.07
SEMA4D-201ENST00000339861 FAM9BQ8IZU0 186 aa15.46■□□□□ 0.07
SEMA4D-201ENST00000339861 DHX57Q6P158 1386 aaKnown RBP15.46■□□□□ 0.07
SEMA4D-201ENST00000339861 ATAD2BQ9ULI0 1458 aa15.45■□□□□ 0.06
SEMA4D-201ENST00000339861 ZNF777Q9ULD5 760 aaPredicted RBP15.44■□□□□ 0.06
SEMA4D-201ENST00000339861 MTUS2Q5JR59 1369 aa15.44■□□□□ 0.06
SEMA4D-201ENST00000339861 CUX2O14529 1486 aa15.43■□□□□ 0.06
SEMA4D-201ENST00000339861 RAB3GAP2Q9H2M9 1393 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms