RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 GNL2Q13823 731 aaKnown RBP12.38□□□□□ -0.43
COL4A6-201ENST00000334504 A0A0U1RQG5 324 aaPredicted RBP12.37□□□□□ -0.43
COL4A6-201ENST00000334504 CALD1Q05682 793 aaKnown RBP12.37□□□□□ -0.43
COL4A6-201ENST00000334504 U2SURPO15042 1029 aaKnown RBP12.37□□□□□ -0.43
COL4A6-201ENST00000334504 MFAP1P55081 439 aaKnown RBP12.37□□□□□ -0.43
COL4A6-201ENST00000334504 TPM4P67936 248 aa12.37□□□□□ -0.43
COL4A6-201ENST00000334504 FOXD4L1Q9NU39 408 aa12.36□□□□□ -0.43
COL4A6-201ENST00000334504 GSE1Q14687 1217 aa12.35□□□□□ -0.43
COL4A6-201ENST00000334504 ISY1Q9ULR0 285 aaKnown RBP12.35□□□□□ -0.43
COL4A6-201ENST00000334504 APBB1O00213 710 aa12.35□□□□□ -0.43
COL4A6-201ENST00000334504 CALRP27797 417 aaKnown RBP12.34□□□□□ -0.43
COL4A6-201ENST00000334504 PKNOX2Q96KN3 472 aa12.34□□□□□ -0.43
COL4A6-201ENST00000334504 USP35Q9P2H5 1018 aa12.34□□□□□ -0.43
COL4A6-201ENST00000334504 RCAN3Q9UKA8 241 aa12.34□□□□□ -0.43
COL4A6-201ENST00000334504 MLECQ14165 292 aa12.33□□□□□ -0.44
COL4A6-201ENST00000334504 CEP162Q5TB80 1403 aa12.33□□□□□ -0.44
COL4A6-201ENST00000334504 HTATSF1O43719 755 aaKnown RBP12.33□□□□□ -0.44
COL4A6-201ENST00000334504 KIAA1211Q6ZU35 1233 aa12.32□□□□□ -0.44
COL4A6-201ENST00000334504 RWDD1Q9H446 243 aaPredicted RBP12.31□□□□□ -0.44
COL4A6-201ENST00000334504 SOX12O15370 315 aa12.3□□□□□ -0.44
COL4A6-201ENST00000334504 PRKCSHP14314 528 aaPredicted RBP12.3□□□□□ -0.44
COL4A6-201ENST00000334504 HSP90B1P14625 803 aaKnown RBP12.3□□□□□ -0.44
COL4A6-201ENST00000334504 DDX11L8A8MPP1 907 aa12.3□□□□□ -0.44
COL4A6-201ENST00000334504 GOLGA2Q08379 1002 aa12.3□□□□□ -0.44
COL4A6-201ENST00000334504 FAM13BQ9NYF5 915 aa12.29□□□□□ -0.44
COL4A6-201ENST00000334504 PDE4CQ08493 712 aa12.29□□□□□ -0.44
COL4A6-201ENST00000334504 ZCCHC6Q5VYS8 1495 aaKnown RBP12.29□□□□□ -0.44
COL4A6-201ENST00000334504 PHF14O94880 888 aa12.28□□□□□ -0.44
COL4A6-201ENST00000334504 SLC4A3P48751 1232 aa12.28□□□□□ -0.44
COL4A6-201ENST00000334504 ITPRIPQ8IWB1 547 aa12.28□□□□□ -0.44
COL4A6-201ENST00000334504 CCDC9Q9Y3X0 531 aaKnown RBP12.28□□□□□ -0.44
COL4A6-201ENST00000334504 PATL2C9JE40 543 aaKnown RBP12.28□□□□□ -0.44
COL4A6-201ENST00000334504 CSPP1Q1MSJ5 1256 aa12.28□□□□□ -0.44
COL4A6-201ENST00000334504 FOXD4L5Q5VV16 416 aaPredicted RBP12.27□□□□□ -0.44
COL4A6-201ENST00000334504 FOXD4L4Q8WXT5 416 aaPredicted RBP12.27□□□□□ -0.44
COL4A6-201ENST00000334504 NOL8Q76FK4 1167 aaKnown RBP12.27□□□□□ -0.45
COL4A6-201ENST00000334504 RSF1Q96T23 1441 aaPredicted RBP12.27□□□□□ -0.45
COL4A6-201ENST00000334504 AEBP2Q6ZN18 517 aaPredicted RBP12.27□□□□□ -0.45
COL4A6-201ENST00000334504 PMFBP1Q8TBY8 1022 aa12.26□□□□□ -0.45
COL4A6-201ENST00000334504 PODXL2Q9NZ53 605 aa12.26□□□□□ -0.45
COL4A6-201ENST00000334504 GOLGA3Q08378 1498 aa12.25□□□□□ -0.45
COL4A6-201ENST00000334504 TPM3P06753 285 aa12.25□□□□□ -0.45
COL4A6-201ENST00000334504 HSPA5P11021 654 aaKnown RBP12.25□□□□□ -0.45
COL4A6-201ENST00000334504 TMF1P82094 1093 aa12.25□□□□□ -0.45
COL4A6-201ENST00000334504 CCAR2Q8N163 923 aaKnown RBP12.25□□□□□ -0.45
COL4A6-201ENST00000334504 PRM3Q9NNZ6 103 aa12.25□□□□□ -0.45
COL4A6-201ENST00000334504 IPO8O15397 1037 aaKnown RBP12.25□□□□□ -0.45
COL4A6-201ENST00000334504 CREBRFQ8IUR6 639 aa12.24□□□□□ -0.45
COL4A6-201ENST00000334504 ZNF592Q92610 1267 aa12.23□□□□□ -0.45
COL4A6-201ENST00000334504 GPS2Q13227 327 aa12.23□□□□□ -0.45
COL4A6-201ENST00000334504 ANO8Q9HCE9 1232 aaPredicted RBP12.23□□□□□ -0.45
COL4A6-201ENST00000334504 DDX49Q9Y6V7 483 aaKnown RBP12.22□□□□□ -0.45
COL4A6-201ENST00000334504 POGKQ9P215 609 aa12.22□□□□□ -0.45
COL4A6-201ENST00000334504 KTN1Q86UP2 1357 aaKnown RBP12.21□□□□□ -0.45
COL4A6-201ENST00000334504 TEX35Q5T0J7 233 aa12.21□□□□□ -0.45
COL4A6-201ENST00000334504 MORC1Q86VD1 984 aa12.21□□□□□ -0.45
COL4A6-201ENST00000334504 SKOR2Q2VWA4 1001 aaPredicted RBP12.21□□□□□ -0.46
COL4A6-201ENST00000334504 PDE4AP27815 886 aa12.2□□□□□ -0.46
COL4A6-201ENST00000334504 FANCIQ9NVI1 1328 aa12.2□□□□□ -0.46
COL4A6-201ENST00000334504 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.19□□□□□ -0.46
COL4A6-201ENST00000334504 ZNF330Q9Y3S2 320 aaPredicted RBP12.19□□□□□ -0.46
COL4A6-201ENST00000334504 TRIM6-TRIM34B2RNG4 842 aa12.19□□□□□ -0.46
COL4A6-201ENST00000334504 APPP05067 770 aa12.19□□□□□ -0.46
COL4A6-201ENST00000334504 ST18O60284 1047 aa12.18□□□□□ -0.46
COL4A6-201ENST00000334504 DCAF11Q8TEB1 546 aa12.18□□□□□ -0.46
COL4A6-201ENST00000334504 FAM43AQ8N2R8 423 aa12.18□□□□□ -0.46
COL4A6-201ENST00000334504 CCDC34Q96HJ3 373 aa12.18□□□□□ -0.46
COL4A6-201ENST00000334504 PHF23Q9BUL5 403 aaPredicted RBP12.17□□□□□ -0.46
COL4A6-201ENST00000334504 GOLGA6L19H0YKK7 550 aa12.16□□□□□ -0.46
COL4A6-201ENST00000334504 FAM161AQ3B820 660 aa12.16□□□□□ -0.46
COL4A6-201ENST00000334504 ERCC6Q03468 1493 aa12.16□□□□□ -0.46
COL4A6-201ENST00000334504 FOXD4L6Q3SYB3 417 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-201ENST00000334504 NOM1Q5C9Z4 860 aaKnown RBP12.15□□□□□ -0.46
COL4A6-201ENST00000334504 FOXD4L3Q6VB84 417 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-201ENST00000334504 CFDP1Q9UEE9 299 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-201ENST00000334504 KIF16BQ96L93 1317 aa12.15□□□□□ -0.46
COL4A6-201ENST00000334504 RASSF8Q8NHQ8 419 aa12.15□□□□□ -0.46
COL4A6-201ENST00000334504 RTF1Q92541 710 aaKnown RBP12.14□□□□□ -0.47
COL4A6-201ENST00000334504 CCDC70Q6NSX1 233 aa12.14□□□□□ -0.47
COL4A6-201ENST00000334504 CLUAP1Q96AJ1 413 aa12.14□□□□□ -0.47
COL4A6-201ENST00000334504 SMC4Q9NTJ3 1288 aa12.14□□□□□ -0.47
COL4A6-201ENST00000334504 PES1O00541 588 aaKnown RBP12.13□□□□□ -0.47
COL4A6-201ENST00000334504 PLEKHD1A6NEE1 506 aa12.13□□□□□ -0.47
COL4A6-201ENST00000334504 RALBP1Q15311 655 aa12.13□□□□□ -0.47
COL4A6-201ENST00000334504 SF3A1Q15459 793 aaKnown RBP12.13□□□□□ -0.47
COL4A6-201ENST00000334504 BECN2A8MW95 431 aa12.13□□□□□ -0.47
COL4A6-201ENST00000334504 CEP89Q96ST8 783 aa12.13□□□□□ -0.47
COL4A6-201ENST00000334504 R3HCC1Q9Y3T6 440 aaKnown RBP12.13□□□□□ -0.47
COL4A6-201ENST00000334504 TAF7LQ5H9L4 462 aa12.12□□□□□ -0.47
COL4A6-201ENST00000334504 TNIKQ9UKE5 1360 aa12.12□□□□□ -0.47
COL4A6-201ENST00000334504 TPD52L1Q16890 204 aaPredicted RBP12.12□□□□□ -0.47
COL4A6-201ENST00000334504 KRI1Q8N9T8 703 aaKnown RBP12.11□□□□□ -0.47
COL4A6-201ENST00000334504 GPATCH3Q96I76 525 aa12.11□□□□□ -0.47
COL4A6-201ENST00000334504 KLHL34Q8N239 644 aa12.11□□□□□ -0.47
COL4A6-201ENST00000334504 EEA1Q15075 1411 aa12.11□□□□□ -0.47
COL4A6-201ENST00000334504 TSR1Q2NL82 804 aaKnown RBP12.11□□□□□ -0.47
COL4A6-201ENST00000334504 CENPQQ7L2Z9 268 aaPredicted RBP12.11□□□□□ -0.47
COL4A6-201ENST00000334504 CCNB3Q8WWL7 1395 aa12.11□□□□□ -0.47
COL4A6-201ENST00000334504 U2AF1L5P0DN76 240 aaPredicted RBP12.1□□□□□ -0.47
COL4A6-201ENST00000334504 U2AF1Q01081 240 aaKnown RBP eCLIP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms