RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 GGT6Q6P531 493 aa21.82■■□□□ 1.08
PHRF1-201ENST00000264555 PHLDB1Q86UU1 1377 aa21.82■■□□□ 1.08
PHRF1-201ENST00000264555 ARAP1Q96P48 1450 aa21.82■■□□□ 1.08
PHRF1-201ENST00000264555 CASKIN1Q8WXD9 1431 aa21.81■■□□□ 1.08
PHRF1-201ENST00000264555 B4GALNT3Q6L9W6 998 aa21.8■■□□□ 1.08
PHRF1-201ENST00000264555 CUX1P39880 1505 aa21.8■■□□□ 1.08
PHRF1-201ENST00000264555 ERICH6BQ5W0A0 696 aa21.79■■□□□ 1.08
PHRF1-201ENST00000264555 MYOM3Q5VTT5 1437 aa21.79■■□□□ 1.08
PHRF1-201ENST00000264555 FTSJ3Q8IY81 847 aaKnown RBP21.78■■□□□ 1.08
PHRF1-201ENST00000264555 PTPRGP23470 1445 aa21.78■■□□□ 1.08
PHRF1-201ENST00000264555 ANP32BQ92688 251 aaKnown RBP21.78■■□□□ 1.08
PHRF1-201ENST00000264555 SPAG9O60271 1321 aaKnown RBP21.77■■□□□ 1.08
PHRF1-201ENST00000264555 C14orf37Q86TY3 774 aa21.77■■□□□ 1.08
PHRF1-201ENST00000264555 BECN1Q14457 450 aa21.76■■□□□ 1.07
PHRF1-201ENST00000264555 MORC1Q86VD1 984 aa21.75■■□□□ 1.07
PHRF1-201ENST00000264555 KIF3BO15066 747 aa21.75■■□□□ 1.07
PHRF1-201ENST00000264555 PNNQ9H307 717 aaKnown RBP21.74■■□□□ 1.07
PHRF1-201ENST00000264555 RRBP1Q9P2E9 1410 aaKnown RBP21.74■■□□□ 1.07
PHRF1-201ENST00000264555 AQRO60306 1485 aaKnown RBP eCLIP21.73■■□□□ 1.072e-7■■■■■ 30.3
PHRF1-201ENST00000264555 HDGFP51858 240 aaKnown RBP21.72■■□□□ 1.07
PHRF1-201ENST00000264555 U2SURPO15042 1029 aaKnown RBP21.72■■□□□ 1.07
PHRF1-201ENST00000264555 SRPK2P78362 688 aaKnown RBP21.72■■□□□ 1.07
PHRF1-201ENST00000264555 FRAT1Q92837 279 aaPredicted RBP21.72■■□□□ 1.07
PHRF1-201ENST00000264555 FYCO1Q9BQS8 1478 aa21.71■■□□□ 1.07
PHRF1-201ENST00000264555 EIF3AQ14152 1382 aaKnown RBP21.71■■□□□ 1.07
PHRF1-201ENST00000264555 ANP32EQ9BTT0 268 aa21.71■■□□□ 1.07
PHRF1-201ENST00000264555 MS4A1P11836 297 aa21.7■■□□□ 1.06
PHRF1-201ENST00000264555 UACAQ9BZF9 1416 aa21.69■■□□□ 1.06
PHRF1-201ENST00000264555 ZBTB7CA1YPR0 619 aa21.69■■□□□ 1.06
PHRF1-201ENST00000264555 BICRAQ9NZM4 1560 aa21.68■■□□□ 1.06
PHRF1-201ENST00000264555 CCDC144AA2RUR9 1427 aa21.68■■□□□ 1.06
PHRF1-201ENST00000264555 LAS1LQ9Y4W2 734 aaKnown RBP21.68■■□□□ 1.06
PHRF1-201ENST00000264555 NCOA2Q15596 1464 aa21.67■■□□□ 1.06
PHRF1-201ENST00000264555 GRIN2BQ13224 1484 aa21.66■■□□□ 1.06
PHRF1-201ENST00000264555 EFCAB5A4FU69 1503 aa21.65■■□□□ 1.06
PHRF1-201ENST00000264555 SAFB2Q14151 953 aaKnown RBP eCLIP21.65■■□□□ 1.06
PHRF1-201ENST00000264555 NLRP13Q86W25 1043 aa21.65■■□□□ 1.06
PHRF1-201ENST00000264555 MLECQ14165 292 aa21.64■■□□□ 1.05
PHRF1-201ENST00000264555 CHMP4BQ9H444 224 aaKnown RBP21.64■■□□□ 1.05
PHRF1-201ENST00000264555 RGS3P49796 1198 aa21.64■■□□□ 1.05
PHRF1-201ENST00000264555 TOPBP1Q92547 1522 aa21.64■■□□□ 1.05
PHRF1-201ENST00000264555 NESP48681 1621 aa21.64■■□□□ 1.05
PHRF1-201ENST00000264555 CC2D2AQ9P2K1 1620 aa21.63■■□□□ 1.05
PHRF1-201ENST00000264555 RCAN3Q9UKA8 241 aa21.63■■□□□ 1.05
PHRF1-201ENST00000264555 ST20-MTHFSA0A0A6YYL1 179 aa21.63■■□□□ 1.05
PHRF1-201ENST00000264555 KIF15Q9NS87 1388 aa21.61■■□□□ 1.05
PHRF1-201ENST00000264555 STK26Q9P289 416 aa21.61■■□□□ 1.05
PHRF1-201ENST00000264555 POLA1P09884 1462 aaPredicted RBP21.61■■□□□ 1.05
PHRF1-201ENST00000264555 ZNF644Q9H582 1327 aaPredicted RBP21.6■■□□□ 1.05
PHRF1-201ENST00000264555 PRKRIP1Q9H875 184 aaPredicted RBP21.6■■□□□ 1.05
PHRF1-201ENST00000264555 PLEKHG5O94827 1062 aa21.59■■□□□ 1.05
PHRF1-201ENST00000264555 EIF5BO60841 1220 aaKnown RBP21.59■■□□□ 1.05
PHRF1-201ENST00000264555 HDGFL2Q7Z4V5 671 aaPredicted RBP21.59■■□□□ 1.05
PHRF1-201ENST00000264555 USP47Q96K76 1375 aa21.58■■□□□ 1.05
PHRF1-201ENST00000264555 RBM19Q9Y4C8 960 aaKnown RBP21.58■■□□□ 1.05
PHRF1-201ENST00000264555 NOP58Q9Y2X3 529 aaKnown RBP21.57■■□□□ 1.04
PHRF1-201ENST00000264555 WASHC2CQ9Y4E1 1318 aa21.56■■□□□ 1.04
PHRF1-201ENST00000264555 MYBBP1AQ9BQG0 1328 aaKnown RBP21.56■■□□□ 1.04
PHRF1-201ENST00000264555 PDE3BQ13370 1112 aa21.55■■□□□ 1.04
PHRF1-201ENST00000264555 DNMBPQ6XZF7 1577 aa21.54■■□□□ 1.04
PHRF1-201ENST00000264555 MRC2Q9UBG0 1479 aa21.53■■□□□ 1.04
PHRF1-201ENST00000264555 PEG3Q9GZU2 1588 aa21.53■■□□□ 1.04
PHRF1-201ENST00000264555 CASC1Q6TDU7 716 aa21.52■■□□□ 1.04
PHRF1-201ENST00000264555 TIAM1Q13009 1591 aa21.52■■□□□ 1.03
PHRF1-201ENST00000264555 PRDM2Q13029 1718 aa21.51■■□□□ 1.03
PHRF1-201ENST00000264555 U2AF1L5P0DN76 240 aaPredicted RBP21.5■■□□□ 1.03
PHRF1-201ENST00000264555 U2AF1Q01081 240 aaKnown RBP eCLIP21.5■■□□□ 1.03
PHRF1-201ENST00000264555 IFT140Q96RY7 1462 aa21.49■■□□□ 1.03
PHRF1-201ENST00000264555 PANK3Q9H999 370 aa21.49■■□□□ 1.03
PHRF1-201ENST00000264555 ARXQ96QS3 562 aa21.48■■□□□ 1.03
PHRF1-201ENST00000264555 ANKRD50Q9ULJ7 1429 aa21.48■■□□□ 1.03
PHRF1-201ENST00000264555 EHBP1L1Q8N3D4 1523 aa21.48■■□□□ 1.03
PHRF1-201ENST00000264555 GOLGA2Q08379 1002 aa21.47■■□□□ 1.03
PHRF1-201ENST00000264555 GOLGA6L22H0YM25 854 aa21.45■■□□□ 1.02
PHRF1-201ENST00000264555 TERF2IPQ9NYB0 399 aa21.45■■□□□ 1.02
PHRF1-201ENST00000264555 ZBED9Q6R2W3 1325 aa21.45■■□□□ 1.02
PHRF1-201ENST00000264555 HAP1P54257 671 aaPredicted RBP21.45■■□□□ 1.02
PHRF1-201ENST00000264555 TSHZ2Q9NRE2 1034 aa21.44■■□□□ 1.02
PHRF1-201ENST00000264555 MIA2Q96PC5 1412 aa21.44■■□□□ 1.02
PHRF1-201ENST00000264555 ABCA10Q8WWZ4 1543 aa21.44■■□□□ 1.02
PHRF1-201ENST00000264555 CCDC7Q96M83 1385 aa21.44■■□□□ 1.02
PHRF1-201ENST00000264555 LMOD2Q6P5Q4 547 aa21.43■■□□□ 1.02
PHRF1-201ENST00000264555 TCERG1O14776 1098 aaKnown RBP21.43■■□□□ 1.02
PHRF1-201ENST00000264555 IPO8O15397 1037 aaKnown RBP21.42■■□□□ 1.02
PHRF1-201ENST00000264555 CALD1Q05682 793 aaKnown RBP21.41■■□□□ 1.02
PHRF1-201ENST00000264555 TRAK1Q9UPV9 953 aa21.41■■□□□ 1.02
PHRF1-201ENST00000264555 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.41■■□□□ 1.022e-6■■■□□ 15.2
PHRF1-201ENST00000264555 HFM1A2PYH4 1435 aa21.41■■□□□ 1.02
PHRF1-201ENST00000264555 KIF7Q2M1P5 1343 aa21.4■■□□□ 1.02
PHRF1-201ENST00000264555 NUTM2DQ5VT03 806 aaPredicted RBP21.39■■□□□ 1.01
PHRF1-201ENST00000264555 STAC3Q96MF2 364 aa21.39■■□□□ 1.01
PHRF1-201ENST00000264555 SOX12O15370 315 aa21.38■■□□□ 1.01
PHRF1-201ENST00000264555 SYNJ2O15056 1496 aa21.37■■□□□ 1.01
PHRF1-201ENST00000264555 CCDC146Q8IYE0 955 aa21.37■■□□□ 1.01
PHRF1-201ENST00000264555 TRHP20396 242 aaPredicted RBP21.37■■□□□ 1.01
PHRF1-201ENST00000264555 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
PHRF1-201ENST00000264555 HECW1Q76N89 1606 aa21.37■■□□□ 1.01
PHRF1-201ENST00000264555 VGFO15240 615 aaPredicted RBP21.36■■□□□ 1.01
PHRF1-201ENST00000264555 CNTLNQ9NXG0 1405 aa21.36■■□□□ 1.01
PHRF1-201ENST00000264555 NCLP19338 710 aaKnown RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms