RNA–Protein interactions for RNA: ENST00000261667.7

KPNA3-201, Transcript of karyopherin subunit alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KPNA3, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KPNA3-201ENST00000261667 PBRM1Q86U86 1689 aa13.85□□□□□ -0.19
KPNA3-201ENST00000261667 FAM43AQ8N2R8 423 aa13.83□□□□□ -0.2
KPNA3-201ENST00000261667 MYH16Q9H6N6 1097 aa13.83□□□□□ -0.2
KPNA3-201ENST00000261667 CTTNBP2Q8WZ74 1663 aa13.82□□□□□ -0.2
KPNA3-201ENST00000261667 ZBTB7CA1YPR0 619 aa13.82□□□□□ -0.2
KPNA3-201ENST00000261667 RBM10P98175 930 aaKnown RBP13.81□□□□□ -0.2
KPNA3-201ENST00000261667 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.81□□□□□ -0.2
KPNA3-201ENST00000261667 ARAP1Q96P48 1450 aa13.81□□□□□ -0.2
KPNA3-201ENST00000261667 PAK3O75914 559 aaPredicted RBP13.8□□□□□ -0.2
KPNA3-201ENST00000261667 SENP3-EIF4A1A0A087X0R7 540 aa13.78□□□□□ -0.2
KPNA3-201ENST00000261667 TMC1Q8TDI8 760 aa13.78□□□□□ -0.2
KPNA3-201ENST00000261667 CHAF1AQ13111 956 aaPredicted RBP13.78□□□□□ -0.2
KPNA3-201ENST00000261667 BBXQ8WY36 941 aaPredicted RBP13.77□□□□□ -0.21
KPNA3-201ENST00000261667 RGS3P49796 1198 aa13.76□□□□□ -0.21
KPNA3-201ENST00000261667 SLKQ9H2G2 1235 aaPredicted RBP13.76□□□□□ -0.21
KPNA3-201ENST00000261667 VPS8Q8N3P4 1428 aa13.76□□□□□ -0.21
KPNA3-201ENST00000261667 CARMIL1Q5VZK9 1371 aa13.76□□□□□ -0.21
KPNA3-201ENST00000261667 ZNF771Q7L3S4 317 aaPredicted RBP13.75□□□□□ -0.21
KPNA3-201ENST00000261667 FRAT1Q92837 279 aaPredicted RBP13.75□□□□□ -0.21
KPNA3-201ENST00000261667 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
KPNA3-201ENST00000261667 TCERG1O14776 1098 aaKnown RBP13.74□□□□□ -0.21
KPNA3-201ENST00000261667 GAPVD1Q14C86 1478 aa13.74□□□□□ -0.21
KPNA3-201ENST00000261667 ADAMTS12P58397 1594 aa13.74□□□□□ -0.21
KPNA3-201ENST00000261667 TONSLQ96HA7 1378 aa13.73□□□□□ -0.21
KPNA3-201ENST00000261667 MAP7D2Q96T17 732 aa13.72□□□□□ -0.21
KPNA3-201ENST00000261667 CCER2I3L3R5 266 aa13.72□□□□□ -0.21
KPNA3-201ENST00000261667 KCNH8Q96L42 1107 aa13.72□□□□□ -0.21
KPNA3-201ENST00000261667 IFT140Q96RY7 1462 aa13.72□□□□□ -0.21
KPNA3-201ENST00000261667 SLC4A3P48751 1232 aa13.71□□□□□ -0.21
KPNA3-201ENST00000261667 SPRYD3Q8NCJ5 442 aa13.71□□□□□ -0.22
KPNA3-201ENST00000261667 SAMD9Q5K651 1589 aa13.7□□□□□ -0.22
KPNA3-201ENST00000261667 MAPK8IP2Q13387 824 aaPredicted RBP13.7□□□□□ -0.22
KPNA3-201ENST00000261667 PLCB2Q00722 1185 aa13.7□□□□□ -0.22
KPNA3-201ENST00000261667 BCL11BQ9C0K0 894 aaPredicted RBP13.7□□□□□ -0.22
KPNA3-201ENST00000261667 EIF4G3O43432 1585 aaKnown RBP13.7□□□□□ -0.22
KPNA3-201ENST00000261667 NFKBIBQ15653 356 aa13.68□□□□□ -0.22
KPNA3-201ENST00000261667 TPM2P07951 284 aa13.68□□□□□ -0.22
KPNA3-201ENST00000261667 TAF7LQ5H9L4 462 aa13.68□□□□□ -0.22
KPNA3-201ENST00000261667 ZNF608Q9ULD9 1512 aaPredicted RBP13.66□□□□□ -0.22
KPNA3-201ENST00000261667 TDRD9Q8NDG6 1382 aaKnown RBP13.66□□□□□ -0.22
KPNA3-201ENST00000261667 EFCAB5A4FU69 1503 aa13.65□□□□□ -0.22
KPNA3-201ENST00000261667 SLC4A1APQ9BWU0 796 aaKnown RBP13.64□□□□□ -0.23
KPNA3-201ENST00000261667 PAXIP1Q6ZW49 1069 aaPredicted RBP13.64□□□□□ -0.23
KPNA3-201ENST00000261667 KIAA2012Q0VF49 1180 aa13.64□□□□□ -0.23
KPNA3-201ENST00000261667 MAP3K1Q13233 1512 aa13.63□□□□□ -0.23
KPNA3-201ENST00000261667 MTERF4Q7Z6M4 381 aaKnown RBP13.62□□□□□ -0.23
KPNA3-201ENST00000261667 GRIN2BQ13224 1484 aa13.62□□□□□ -0.23
KPNA3-201ENST00000261667 PDE4AP27815 886 aa13.62□□□□□ -0.23
KPNA3-201ENST00000261667 CFAP43Q8NDM7 1665 aa13.62□□□□□ -0.23
KPNA3-201ENST00000261667 HAP1P54257 671 aaPredicted RBP13.62□□□□□ -0.23
KPNA3-201ENST00000261667 FBLN2P98095 1184 aa13.62□□□□□ -0.23
KPNA3-201ENST00000261667 LRRIQ1Q96JM4 1722 aa13.62□□□□□ -0.23
KPNA3-201ENST00000261667 AQRO60306 1485 aaKnown RBP eCLIP13.61□□□□□ -0.233e-7■■□□□ 11.9
KPNA3-201ENST00000261667 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.61□□□□□ -0.23
KPNA3-201ENST00000261667 FHAD1B1AJZ9 1412 aa13.61□□□□□ -0.23
KPNA3-201ENST00000261667 ZHX1Q9UKY1 873 aaPredicted RBP13.59□□□□□ -0.23
KPNA3-201ENST00000261667 ERCC6Q03468 1493 aa13.59□□□□□ -0.23
KPNA3-201ENST00000261667 TPRNQ4KMQ1 711 aa13.58□□□□□ -0.24
KPNA3-201ENST00000261667 HSP90AB1P08238 724 aaKnown RBP13.58□□□□□ -0.24
KPNA3-201ENST00000261667 R3HCC1Q9Y3T6 440 aaKnown RBP13.58□□□□□ -0.24
KPNA3-201ENST00000261667 PCF11O94913 1555 aaKnown RBP13.57□□□□□ -0.24
KPNA3-201ENST00000261667 AEBP1Q8IUX7 1158 aa13.56□□□□□ -0.24
KPNA3-201ENST00000261667 PDCL3Q9H2J4 239 aa13.56□□□□□ -0.24
KPNA3-201ENST00000261667 HSCBQ8IWL3 235 aa13.56□□□□□ -0.24
KPNA3-201ENST00000261667 NAP1L2Q9ULW6 460 aaPredicted RBP13.56□□□□□ -0.24
KPNA3-201ENST00000261667 PATL2C9JE40 543 aaKnown RBP13.55□□□□□ -0.24
KPNA3-201ENST00000261667 SNAPC4Q5SXM2 1469 aa13.55□□□□□ -0.24
KPNA3-201ENST00000261667 TIAM1Q13009 1591 aa13.55□□□□□ -0.24
KPNA3-201ENST00000261667 PLCD3Q8N3E9 789 aa13.55□□□□□ -0.24
KPNA3-201ENST00000261667 GBP4Q96PP9 640 aa13.55□□□□□ -0.24
KPNA3-201ENST00000261667 PRDM10Q9NQV6 1147 aa13.54□□□□□ -0.24
KPNA3-201ENST00000261667 FGD1P98174 961 aa13.54□□□□□ -0.24
KPNA3-201ENST00000261667 MAGI1Q96QZ7 1491 aaPredicted RBP13.54□□□□□ -0.24
KPNA3-201ENST00000261667 IQGAP2Q13576 1575 aa13.53□□□□□ -0.24
KPNA3-201ENST00000261667 UGGT2Q9NYU1 1516 aa13.53□□□□□ -0.24
KPNA3-201ENST00000261667 P3H3Q8IVL6 736 aa13.53□□□□□ -0.24
KPNA3-201ENST00000261667 ARID3CA6NKF2 412 aa13.52□□□□□ -0.24
KPNA3-201ENST00000261667 SIN3AQ96ST3 1273 aa13.52□□□□□ -0.24
KPNA3-201ENST00000261667 CHMP4BQ9H444 224 aaKnown RBP13.52□□□□□ -0.25
KPNA3-201ENST00000261667 GOLGA6L6A8MZA4 724 aa13.51□□□□□ -0.25
KPNA3-201ENST00000261667 WDR43Q15061 677 aaKnown RBP eCLIP13.51□□□□□ -0.25
KPNA3-201ENST00000261667 KIAA1211Q6ZU35 1233 aa13.51□□□□□ -0.25
KPNA3-201ENST00000261667 CEP170Q5SW79 1584 aa13.5□□□□□ -0.25
KPNA3-201ENST00000261667 FYCO1Q9BQS8 1478 aa13.5□□□□□ -0.25
KPNA3-201ENST00000261667 CCDC66A2RUB6 948 aa13.5□□□□□ -0.25
KPNA3-201ENST00000261667 FRAT2O75474 233 aaPredicted RBP13.5□□□□□ -0.25
KPNA3-201ENST00000261667 GRIN2AQ12879 1464 aa13.5□□□□□ -0.25
KPNA3-201ENST00000261667 EIF4G2P78344 907 aaKnown RBP eCLIP13.5□□□□□ -0.25
KPNA3-201ENST00000261667 CASKIN1Q8WXD9 1431 aa13.48□□□□□ -0.25
KPNA3-201ENST00000261667 CALRP27797 417 aaKnown RBP13.48□□□□□ -0.25
KPNA3-201ENST00000261667 CSPP1Q1MSJ5 1256 aa13.47□□□□□ -0.25
KPNA3-201ENST00000261667 E9PSI1 815 aa13.47□□□□□ -0.25
KPNA3-201ENST00000261667 CHMP4AQ9BY43 222 aa13.47□□□□□ -0.25
KPNA3-201ENST00000261667 SYNJ2O15056 1496 aa13.47□□□□□ -0.25
KPNA3-201ENST00000261667 FHOD3Q2V2M9 1422 aa13.46□□□□□ -0.25
KPNA3-201ENST00000261667 MRE11P49959 708 aa13.46□□□□□ -0.25
KPNA3-201ENST00000261667 GOLGA6L1Q8N7Z2 621 aa13.46□□□□□ -0.25
KPNA3-201ENST00000261667 CCNB3Q8WWL7 1395 aa13.46□□□□□ -0.26
KPNA3-201ENST00000261667 TAF3Q5VWG9 929 aa13.45□□□□□ -0.26
KPNA3-201ENST00000261667 NUP160Q12769 1436 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms