RNA–Protein interactions for RNA: ENST00000229387.6

RFX4-201, Transcript of regulatory factor X4, humanhuman

TSL 1 (best) BASIC

Gene RFX4, Length 3,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-201ENST00000229387 DMRT2Q9Y5R5 561 aa7.72□□□□□ -1.17
RFX4-201ENST00000229387 FGD5Q6ZNL6 1462 aa7.72□□□□□ -1.17
RFX4-201ENST00000229387 CC2D2AQ9P2K1 1620 aa7.71□□□□□ -1.17
RFX4-201ENST00000229387 SPDYE4A6NLX3 237 aa7.7□□□□□ -1.18
RFX4-201ENST00000229387 HSP90AA2PQ14568 343 aaPredicted RBP7.7□□□□□ -1.18
RFX4-201ENST00000229387 HMGXB3Q12766 1538 aa7.7□□□□□ -1.18
RFX4-201ENST00000229387 CENPJQ9HC77 1338 aaPredicted RBP7.7□□□□□ -1.18
RFX4-201ENST00000229387 FANCD2Q9BXW9 1451 aa7.69□□□□□ -1.18
RFX4-201ENST00000229387 SIN3AQ96ST3 1273 aa7.69□□□□□ -1.18
RFX4-201ENST00000229387 C1orf115Q9H7X2 142 aa7.69□□□□□ -1.18
RFX4-201ENST00000229387 PAK3O75914 559 aaPredicted RBP7.69□□□□□ -1.18
RFX4-201ENST00000229387 DNAJC5Q9H3Z4 198 aa7.69□□□□□ -1.18
RFX4-201ENST00000229387 ARHGAP35Q9NRY4 1499 aa7.69□□□□□ -1.18
RFX4-201ENST00000229387 CALD1Q05682 793 aaKnown RBP7.68□□□□□ -1.18
RFX4-201ENST00000229387 RNF216Q9NWF9 866 aaPredicted RBP7.68□□□□□ -1.18
RFX4-201ENST00000229387 PRDM4Q9UKN5 801 aa7.68□□□□□ -1.18
RFX4-201ENST00000229387 FHOD3Q2V2M9 1422 aa7.68□□□□□ -1.18
RFX4-201ENST00000229387 NAP1L2Q9ULW6 460 aaPredicted RBP7.67□□□□□ -1.18
RFX4-201ENST00000229387 IPO4Q8TEX9 1081 aaKnown RBP7.66□□□□□ -1.18
RFX4-201ENST00000229387 NECTIN2Q92692 538 aa7.66□□□□□ -1.18
RFX4-201ENST00000229387 IPO9Q96P70 1041 aaKnown RBP7.66□□□□□ -1.18
RFX4-201ENST00000229387 BRPF3Q9ULD4 1205 aa7.66□□□□□ -1.18
RFX4-201ENST00000229387 NEUROD2Q15784 382 aa7.65□□□□□ -1.18
RFX4-201ENST00000229387 NAP1L5Q96NT1 182 aaPredicted RBP7.65□□□□□ -1.18
RFX4-201ENST00000229387 CHIC2Q9UKJ5 165 aa7.65□□□□□ -1.18
RFX4-201ENST00000229387 IGSF3O75054 1194 aa7.65□□□□□ -1.18
RFX4-201ENST00000229387 DHX57Q6P158 1386 aaKnown RBP7.65□□□□□ -1.19
RFX4-201ENST00000229387 CCNB3Q8WWL7 1395 aa7.65□□□□□ -1.19
RFX4-201ENST00000229387 CHMP4AQ9BY43 222 aa7.64□□□□□ -1.19
RFX4-201ENST00000229387 BIVM-ERCC5R4GMW8 1640 aa7.64□□□□□ -1.19
RFX4-201ENST00000229387 PHLDB1Q86UU1 1377 aa7.63□□□□□ -1.19
RFX4-201ENST00000229387 HSP90AA1P07900 732 aaKnown RBP7.62□□□□□ -1.19
RFX4-201ENST00000229387 POLA1P09884 1462 aaPredicted RBP7.62□□□□□ -1.19
RFX4-201ENST00000229387 NEFMP07197 916 aa7.62□□□□□ -1.19
RFX4-201ENST00000229387 KCNH8Q96L42 1107 aa7.62□□□□□ -1.19
RFX4-201ENST00000229387 ZBTB47Q9UFB7 747 aaPredicted RBP7.61□□□□□ -1.19
RFX4-201ENST00000229387 RAB3GAP2Q9H2M9 1393 aa7.61□□□□□ -1.19
RFX4-201ENST00000229387 GSE1Q14687 1217 aa7.61□□□□□ -1.19
RFX4-201ENST00000229387 GTF2E1P29083 439 aaPredicted RBP7.6□□□□□ -1.19
RFX4-201ENST00000229387 ERICH3Q5RHP9 1530 aa7.6□□□□□ -1.19
RFX4-201ENST00000229387 RRP7BPQ9NSQ0 103 aa7.6□□□□□ -1.19
RFX4-201ENST00000229387 TOPBP1Q92547 1522 aa7.6□□□□□ -1.19
RFX4-201ENST00000229387 CHRM1P11229 460 aaPredicted RBP7.59□□□□□ -1.19
RFX4-201ENST00000229387 BCCIPQ9P287 314 aaKnown RBP eCLIP7.59□□□□□ -1.19
RFX4-201ENST00000229387 CNGB1Q14028 1251 aaPredicted RBP7.59□□□□□ -1.19
RFX4-201ENST00000229387 PPM1GO15355 546 aaPredicted RBP7.59□□□□□ -1.2
RFX4-201ENST00000229387 SAMD1Q6SPF0 538 aaPredicted RBP7.59□□□□□ -1.2
RFX4-201ENST00000229387 ZNF428Q96B54 188 aa7.59□□□□□ -1.2
RFX4-201ENST00000229387 AQRO60306 1485 aaKnown RBP eCLIP7.58□□□□□ -1.2
RFX4-201ENST00000229387 ANP32AP39687 249 aaKnown RBP7.58□□□□□ -1.2
RFX4-201ENST00000229387 DDX10Q13206 875 aaKnown RBP7.58□□□□□ -1.2
RFX4-201ENST00000229387 LMOD2Q6P5Q4 547 aa7.58□□□□□ -1.2
RFX4-201ENST00000229387 DHX37Q8IY37 1157 aaKnown RBP7.58□□□□□ -1.2
RFX4-201ENST00000229387 POTEHQ6S545 545 aa7.57□□□□□ -1.2
RFX4-201ENST00000229387 URB2Q14146 1524 aaKnown RBP7.57□□□□□ -1.2
RFX4-201ENST00000229387 STAC3Q96MF2 364 aa7.57□□□□□ -1.2
RFX4-201ENST00000229387 MTUS2Q5JR59 1369 aa7.57□□□□□ -1.2
RFX4-201ENST00000229387 NCLP19338 710 aaKnown RBP7.57□□□□□ -1.2
RFX4-201ENST00000229387 TEX2Q8IWB9 1127 aa7.57□□□□□ -1.2
RFX4-201ENST00000229387 PDCL3Q9H2J4 239 aa7.57□□□□□ -1.2
RFX4-201ENST00000229387 CANXP27824 592 aaKnown RBP7.56□□□□□ -1.2
RFX4-201ENST00000229387 TRIM52Q96A61 297 aa7.56□□□□□ -1.2
RFX4-201ENST00000229387 PPP4R2Q9NY27 417 aa7.56□□□□□ -1.2
RFX4-201ENST00000229387 CHMP4BQ9H444 224 aaKnown RBP7.56□□□□□ -1.2
RFX4-201ENST00000229387 FTSJ3Q8IY81 847 aaKnown RBP7.55□□□□□ -1.2
RFX4-201ENST00000229387 RRBP1Q9P2E9 1410 aaKnown RBP7.55□□□□□ -1.2
RFX4-201ENST00000229387 NKX1-1Q15270 411 aaPredicted RBP7.54□□□□□ -1.2
RFX4-201ENST00000229387 CCDC9Q9Y3X0 531 aaKnown RBP7.54□□□□□ -1.2
RFX4-201ENST00000229387 LRRC9Q6ZRR7 1453 aa7.54□□□□□ -1.2
RFX4-201ENST00000229387 MKRN4PQ13434 485 aaPredicted RBP7.54□□□□□ -1.2
RFX4-201ENST00000229387 SLC24A3Q9HC58 644 aa7.54□□□□□ -1.2
RFX4-201ENST00000229387 ZNF777Q9ULD5 760 aaPredicted RBP7.54□□□□□ -1.2
RFX4-201ENST00000229387 VGFO15240 615 aaPredicted RBP7.53□□□□□ -1.2
RFX4-201ENST00000229387 C1QBPQ07021 282 aaKnown RBP7.53□□□□□ -1.2
RFX4-201ENST00000229387 PDS5BQ9NTI5 1447 aa7.53□□□□□ -1.2
RFX4-201ENST00000229387 RGS3P49796 1198 aa7.53□□□□□ -1.2
RFX4-201ENST00000229387 PROM2Q8N271 834 aa7.53□□□□□ -1.2
RFX4-201ENST00000229387 GAPVD1Q14C86 1478 aa7.52□□□□□ -1.21
RFX4-201ENST00000229387 RNF39Q9H2S5 420 aa7.52□□□□□ -1.21
RFX4-201ENST00000229387 ARID4BQ4LE39 1312 aaPredicted RBP7.52□□□□□ -1.21
RFX4-201ENST00000229387 SETD5Q9C0A6 1442 aa7.52□□□□□ -1.21
RFX4-201ENST00000229387 FHAD1B1AJZ9 1412 aa7.51□□□□□ -1.21
RFX4-201ENST00000229387 ZNF644Q9H582 1327 aaPredicted RBP7.51□□□□□ -1.21
RFX4-201ENST00000229387 ZFP91Q96JP5 570 aaPredicted RBP7.51□□□□□ -1.21
RFX4-201ENST00000229387 PCF11O94913 1555 aaKnown RBP7.51□□□□□ -1.21
RFX4-201ENST00000229387 ABCA10Q8WWZ4 1543 aa7.51□□□□□ -1.21
RFX4-201ENST00000229387 SPOCK2Q92563 424 aa7.51□□□□□ -1.21
RFX4-201ENST00000229387 DNMBPQ6XZF7 1577 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 CCER2I3L3R5 266 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 HSP90B1P14625 803 aaKnown RBP7.5□□□□□ -1.21
RFX4-201ENST00000229387 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.5□□□□□ -1.21
RFX4-201ENST00000229387 TIAM1Q13009 1591 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 PRDM2Q13029 1718 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 SENP3-EIF4A1A0A087X0R7 540 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 CLCN1P35523 988 aa7.5□□□□□ -1.21
RFX4-201ENST00000229387 APBB1O00213 710 aa7.49□□□□□ -1.21
RFX4-201ENST00000229387 CHMP7Q8WUX9 453 aaPredicted RBP7.49□□□□□ -1.21
RFX4-201ENST00000229387 RRAGDQ9NQL2 400 aaPredicted RBP7.49□□□□□ -1.21
RFX4-201ENST00000229387 ZNF608Q9ULD9 1512 aaPredicted RBP7.49□□□□□ -1.21
RFX4-201ENST00000229387 SMAP1Q8IYB5 467 aaPredicted RBP7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms