RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	GPA1	P08539	472 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	ILS1	P09436	1072 aa	Known RBP	4.86	□□□□□ -1.63
CAF16	YFL028C	APN1	P22936	367 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	ADK2	P26364	225 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	CDC60	P26637	1090 aa	Known RBP	4.86	□□□□□ -1.63
CAF16	YFL028C	CMC1	P36064	111 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	STB6	P36085	766 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	ANS1	P38832	159 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	YFH7	P43591	353 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	MLC1	P53141	149 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	SGF73	P53165	657 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	TWF1	P53250	332 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	YTP1	P53584	459 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	BOP3	P53958	396 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	TRM44	Q02648	567 aa	Known RBP	4.86	□□□□□ -1.63
CAF16	YFL028C	PRP42	Q03776	544 aa	Known RBP	4.86	□□□□□ -1.63
CAF16	YFL028C	INM2	Q05533	292 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	ECM22	Q05958	814 aa	Predicted RBP	4.86	□□□□□ -1.63
CAF16	YFL028C	PDR8	Q06149	701 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	BSP1	Q06604	576 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	PDR18	P53756	1333 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	GSC2	P40989	1895 aa		4.86	□□□□□ -1.63
CAF16	YFL028C	ART10	P18634	518 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	SAC1	P32368	623 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	PPZ2	P33329	710 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	YBL055C	P34220	418 aa	Predicted RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	GCS1	P35197	352 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	PXL1	P36166	706 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	TSC10	P38342	320 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	DBP8	P38719	431 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	OTU2	P38747	307 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	YMR178W	Q03219	274 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	EMI2	Q04409	500 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	ERB1	Q04660	807 aa	Known RBP	4.85	□□□□□ -1.63
CAF16	YFL028C	NKP2	Q06162	153 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	TPO3	Q06451	622 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	ECM30	Q06673	1274 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	MCH4	Q08268	501 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	YLR111W	Q12528	110 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	FLO1	P32768	1537 aa		4.85	□□□□□ -1.63
CAF16	YFL028C	SNF3	P10870	884 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	BOS1	P25385	244 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	YME1	P32795	747 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	MRE11	P32829	692 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	PTK1	P36002	662 aa	Predicted RBP	4.84	□□□□□ -1.63
CAF16	YFL028C	HOT13	P36078	116 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	HXT14	P42833	540 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	QRI1	P43123	477 aa	Known RBP	4.84	□□□□□ -1.63
CAF16	YFL028C	APT1	P49435	187 aa	Known RBP	4.84	□□□□□ -1.63
CAF16	YFL028C	FIN1	Q03898	291 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	AIM32	Q04689	311 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	RQC1	Q05468	723 aa	Known RBP	4.84	□□□□□ -1.63
CAF16	YFL028C	YLR345W	Q06137	509 aa		4.84	□□□□□ -1.63
CAF16	YFL028C	RPL3	P14126	387 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	HPR1	P17629	752 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	REC107	P21651	314 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	YCR051W	P25631	222 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	PAP1	P29468	568 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	OCT1	P35999	772 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	RPL32	P38061	130 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	PIB2	P53191	635 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	ERG26	P53199	349 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	ART5	P53244	586 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	YGR117C	P53270	476 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	ATP23	P53722	227 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	BNI5	P53890	448 aa	Known RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	RPS10A	Q08745	105 aa	Predicted RBP	4.83	□□□□□ -1.64
CAF16	YFL028C	PFA4	Q12006	378 aa		4.83	□□□□□ -1.64
CAF16	YFL028C	RAD50	P12753	1312 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	KRS1	P15180	591 aa	Known RBP	4.82	□□□□□ -1.64
CAF16	YFL028C	OPI1	P21957	404 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	CLB1	P24868	471 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	STE50	P25344	346 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	YKL100C	P34248	587 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	MSR1	P38714	643 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	ARN1	P38731	627 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	YMR147W	P40218	223 aa	Known RBP	4.82	□□□□□ -1.64
CAF16	YFL028C	RPS10B	P46784	105 aa	Known RBP	4.82	□□□□□ -1.64
CAF16	YFL028C	RPA49	Q01080	415 aa	Predicted RBP	4.82	□□□□□ -1.64
CAF16	YFL028C	RSM23	Q01163	450 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	RCF1	Q03713	159 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	ARX1	Q03862	593 aa	Known RBP	4.82	□□□□□ -1.64
CAF16	YFL028C	SEC39	Q12745	709 aa		4.82	□□□□□ -1.64
CAF16	YFL028C	CYB2	P00175	591 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	ARG81	P05085	880 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	CBP1	P07252	654 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	PMS1	P14242	873 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	NUP1	P20676	1076 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	APE3	P37302	537 aa	Known RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	LRP1	P38801	184 aa	Known RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	ZIM17	P42844	174 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	YJL107C	P42947	387 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	STB2	P46679	850 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	BPL1	P48445	690 aa	Predicted RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	MNP1	P53163	194 aa	Predicted RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	CAF130	P53280	1122 aa	Predicted RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	OGG1	P53397	376 aa	Predicted RBP	4.81	□□□□□ -1.64
CAF16	YFL028C	COQ9	Q05779	260 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	FRE3	Q08905	711 aa		4.81	□□□□□ -1.64
CAF16	YFL028C	AFI1	Q99222	893 aa		4.81	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms