RNA–Protein interactions for RNA: YEL027W

VMA3, Transcript of Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase, yeast

Gene VMA3, Length 483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA3	YEL027W	MDM34	P53083	459 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	YGR015C	P53208	328 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	VHS1	Q03785	461 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	RAD34	Q06665	692 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	YLR049C	Q12110	428 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	RRP42	Q12277	265 aa	Predicted RBP	6.3	□□□□□ -1.4
VMA3	YEL027W	SKM1	Q12469	655 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	YIL046W-A	Q3E7Z4	54 aa		6.3	□□□□□ -1.4
VMA3	YEL027W	AI3	P03877	415 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	COS2	P0CX12	379 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	COS3	P0CX13	379 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	DAL82	P21705	255 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	DBR1	P24309	405 aa	Known RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	DEF1	P35732	738 aa	Known RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	MRPL37	P36532	105 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	SOL2	P37262	315 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	TSC10	P38342	320 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	DMA1	P38823	416 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YHR127W	P38833	243 aa	Known RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	FKH2	P41813	862 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	SSU1	P41930	458 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	COS4	P43542	379 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	TY4A-J	P47023	414 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YJR030C	P47101	745 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YJR149W	P47177	404 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YNL260C	P53846	198 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	REX2	P54964	269 aa	Known RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	GTR1	Q00582	310 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YMR034C	Q05131	434 aa	Predicted RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	GLO2	Q05584	274 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	ESA1	Q08649	445 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	YDR061W	Q12298	539 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	SEC39	Q12745	709 aa		6.29	□□□□□ -1.4
VMA3	YEL027W	BRR1	Q99177	341 aa	Predicted RBP	6.29	□□□□□ -1.4
VMA3	YEL027W	MDM35	O60200	86 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	TRP3	P00937	484 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	STE4	P18851	423 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	PRP6	P19735	899 aa	Predicted RBP	6.28	□□□□□ -1.4
VMA3	YEL027W	OXP1	P28273	1286 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	RAD14	P28519	371 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	6.28	□□□□□ -1.4	not detected
VMA3	YEL027W	FRE2	P36033	711 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	ARA1	P38115	344 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	RLP7	P40693	322 aa	Known RBP	6.28	□□□□□ -1.4
VMA3	YEL027W	TMA22	P47089	198 aa	Predicted RBP	6.28	□□□□□ -1.4
VMA3	YEL027W	NAS6	P50086	228 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	ECM9	Q02202	377 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	GTB1	Q04924	702 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	YDR338C	Q05497	695 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	YEH2	Q07950	538 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	UAF30	Q08747	228 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	PFA4	Q12006	378 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	YDR056C	Q12025	205 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	IOC2	Q12072	812 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	SRN2	Q99176	213 aa		6.28	□□□□□ -1.4
VMA3	YEL027W	HSH49	Q99181	213 aa	Predicted RBP	6.28	□□□□□ -1.4
VMA3	YEL027W	PMR1	P13586	950 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	PHO87	P25360	923 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	RNQ1	P25367	405 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	MLS1	P30952	554 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	PDB1	P32473	366 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	SPT16	P32558	1035 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	RMA1	P36001	430 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	CUE2	P36075	443 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	BMT2	P38278	337 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	INM1	P38710	295 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YHL008C	P38750	627 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	ARB1	P40024	610 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	NDE1	P40215	560 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YGL176C	P46945	554 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	GCV1	P48015	400 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YPT32	P51996	222 aa	Known RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	COS12	P53053	380 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	USE1	P53146	245 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YGR053C	P53234	283 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	NNF2	P53253	936 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YMR111C	Q04461	462 aa	Predicted RBP	6.27	□□□□□ -1.41
VMA3	YEL027W	STP3	Q05937	343 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	FAR10	Q06001	478 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	ATG29	Q12092	213 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YPR011C	Q12251	326 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	RGT2	Q12300	763 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	YDR262W	Q12331	272 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	MHT1	Q12525	324 aa		6.27	□□□□□ -1.41
VMA3	YEL027W	HFA1	P32874	2273 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	HXK2	P04807	486 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	ARD1	P07347	238 aa	Predicted RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	RIP1	P08067	215 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	OCA4	P25366	362 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	GFD2	P25370	566 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	SSE1	P32589	693 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	MGM101	P32787	269 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	CDC13	P32797	924 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	PTC1	P35182	281 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	NTR2	P36118	322 aa	Predicted RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	YBL029W	P38201	376 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	TRM7	P38238	310 aa	Known RBP	6.26	□□□□□ -1.41
VMA3	YEL027W	FZO1	P38297	855 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	IAH1	P41734	238 aa		6.26	□□□□□ -1.41
VMA3	YEL027W	SEC27	P41811	889 aa	Known RBP	6.26	□□□□□ -1.41

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms