RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC9	YDL164C	VAC14	Q06708	880 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	TPO1	Q07824	586 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	RPS10A	Q08745	105 aa	Predicted RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	YOR352W	Q08816	343 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	RAD61	Q99359	647 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	COX1	P00401	534 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	YPT1	P01123	206 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	GAL10	P04397	699 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	ILV5	P06168	395 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	LEU4	P06208	619 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	UGA1	P17649	471 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	ARO4	P32449	370 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	ACP1	P32463	125 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	CDC5	P32562	705 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	TIF5	P38431	405 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	SBE22	P38814	852 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	YMR124W	P39523	943 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	FUN12	P39730	1002 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	RTR1	P40084	226 aa	Predicted RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	GTO1	P48239	356 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	MND1	P53102	219 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	CSI1	Q04368	295 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	ETT1	Q08421	412 aa	Known RBP	4.26	□□□□□ -1.73
CDC9	YDL164C	AI5_ALPHA	Q9ZZX1	630 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	RTC1	Q08281	1341 aa		4.26	□□□□□ -1.73
CDC9	YDL164C	NUP133	P36161	1157 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YHR210C	P38893	341 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	ELO1	P39540	310 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YDL242W	Q07746	117 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	PLP2	Q12017	286 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	AEP3	Q12089	606 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	RRP12	Q12754	1228 aa	Known RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	NBL1	Q3E7Y6	73 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YML133C	Q03099	1374 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YLL066C	Q99208	1374 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YLR278C	Q05854	1341 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	IKI3	Q06706	1349 aa	Known RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	CYC1	P00044	109 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	ABF1	P14164	731 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	CLC1	P17891	233 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	PTC6	P25646	442 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	HIR2	P32480	875 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	GCD7	P32502	381 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	IMP3	P32899	183 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	STV1	P37296	890 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	PTC7	P38797	343 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	BUR6	P40096	142 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	MRK1	P50873	501 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	MPP6	P53725	186 aa	Predicted RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	RSM28	Q03430	361 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	EKI1	Q03764	534 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	YLR173W	Q06247	608 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	HMI1	Q12039	706 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	TRM13	Q12383	476 aa		4.25	□□□□□ -1.73
CDC9	YDL164C	LPX1	Q12405	387 aa	Known RBP	4.25	□□□□□ -1.73
CDC9	YDL164C	CAR1	P00812	333 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	ARG81	P05085	880 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	PET111	P08468	800 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	RPL5	P26321	297 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	CNE1	P27825	502 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	EFB1	P32471	206 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	SNU114	P36048	1008 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	YKL023W	P36103	277 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	AAP1	P37898	856 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	SKN7	P38889	622 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	YFR020W	P43600	232 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	FMP33	P46998	180 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	RPA34	P47006	233 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	MSE1	P48525	536 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	WAR1	Q03631	944 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	MF(ALPHA)1	P01149	165 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	CDC36	P06100	191 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	CDC37	P06101	506 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	ADE5,7	P07244	802 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	MSF1	P08425	469 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	ART10	P18634	518 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	ERG1	P32476	496 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	HES1	P35843	434 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	SHQ1	P40486	507 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	CDC40	P40968	455 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	YMR178W	Q03219	274 aa	Known RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	MRPS17	Q03246	237 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	RSN1	Q03516	953 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	CYK3	Q07533	885 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	RKM1	Q08961	583 aa	Predicted RBP	4.24	□□□□□ -1.73
CDC9	YDL164C	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	4.24	□□□□□ -1.73	not detected
CDC9	YDL164C	YRM1	Q12340	786 aa		4.24	□□□□□ -1.73
CDC9	YDL164C	POL30	P15873	258 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	ALG1	P16661	449 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	SGV1	P23293	657 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	VPS3	P23643	1011 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	PET18	P25362	215 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	HSP104	P31539	908 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	IML3	P38265	245 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	STP2	P38704	541 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	MSR1	P38714	643 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	ULP2	P40537	1034 aa	Predicted RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	LSB3	P43603	459 aa	Known RBP	4.23	□□□□□ -1.73
CDC9	YDL164C	SNG1	P46950	547 aa		4.23	□□□□□ -1.73
CDC9	YDL164C	TAX4	P47030	604 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 20.8 ms