RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeastyeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC48YDL126C IMD4P50094 524 aaKnown RBP4.51□□□□□ -1.69
CDC48YDL126C MDR1P53258 950 aa4.51□□□□□ -1.69
CDC48YDL126C PDR16P53860 351 aaKnown RBP4.51□□□□□ -1.69
CDC48YDL126C ERG5P54781 538 aa4.51□□□□□ -1.69
CDC48YDL126C MUS81Q04149 632 aaPredicted RBP4.51□□□□□ -1.69
CDC48YDL126C CRN1Q06440 651 aa4.51□□□□□ -1.69
CDC48YDL126C FMP45Q07651 309 aa4.51□□□□□ -1.69
CDC48YDL126C GET4Q12125 312 aa4.51□□□□□ -1.69
CDC48YDL126C RPS9AO13516 197 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C PRC1P00729 532 aa4.5□□□□□ -1.69
CDC48YDL126C RPS17AP02407 136 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C RSR1P13856 272 aa4.5□□□□□ -1.69
CDC48YDL126C RPS17BP14127 136 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C STF2P16965 84 aa4.5□□□□□ -1.69
CDC48YDL126C KIN3P22209 435 aa4.5□□□□□ -1.69
CDC48YDL126C CLB3P24870 427 aa4.5□□□□□ -1.69
CDC48YDL126C APL1P27351 700 aa4.5□□□□□ -1.69
CDC48YDL126C RPC19P28000 142 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C UBP11P36026 717 aa4.5□□□□□ -1.69
CDC48YDL126C SRO77P38163 1010 aa4.5□□□□□ -1.69
CDC48YDL126C MCX1P38323 520 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C CBR1P38626 284 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C MUP3P38734 546 aa4.5□□□□□ -1.69
CDC48YDL126C YDR089WP38966 869 aa4.5□□□□□ -1.69
CDC48YDL126C BIR1P47134 954 aa4.5□□□□□ -1.69
CDC48YDL126C NBP1P52919 319 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C ORC3P54790 616 aa4.5□□□□□ -1.69
CDC48YDL126C PUF3Q07807 879 aaKnown RBP RIP-Chip data4.5□□□□□ -1.69not detected
CDC48YDL126C TAF10Q12030 206 aa4.5□□□□□ -1.69
CDC48YDL126C ACF2Q12168 779 aa4.5□□□□□ -1.69
CDC48YDL126C MDY2Q12285 212 aa4.5□□□□□ -1.69
CDC48YDL126C SEY1Q99287 776 aa4.5□□□□□ -1.69
CDC48YDL126C SIR3P06701 978 aa4.5□□□□□ -1.69
CDC48YDL126C RAD1P06777 1100 aa4.5□□□□□ -1.69
CDC48YDL126C PCK1P10963 549 aa4.5□□□□□ -1.69
CDC48YDL126C SPO12P17123 173 aa4.5□□□□□ -1.69
CDC48YDL126C PMA2P19657 947 aa4.5□□□□□ -1.69
CDC48YDL126C RFA1P22336 621 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C CPR3P25719 182 aa4.5□□□□□ -1.69
CDC48YDL126C SRB4P32569 687 aa4.5□□□□□ -1.69
CDC48YDL126C LOS1P33418 1100 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C MCR1P36060 302 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C MNN2P38069 597 aa4.5□□□□□ -1.69
CDC48YDL126C MRX3P38172 270 aa4.5□□□□□ -1.69
CDC48YDL126C SPP381P38282 291 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C POP7P38291 140 aa4.5□□□□□ -1.69
CDC48YDL126C YIL108WP40483 696 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C SHQ1P40486 507 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C FIS1P40515 155 aa4.5□□□□□ -1.69
CDC48YDL126C ROK1P45818 564 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C YJR079WP47126 109 aa4.5□□□□□ -1.69
CDC48YDL126C CAF130P53280 1122 aaPredicted RBP4.5□□□□□ -1.69
CDC48YDL126C IMP4P53941 290 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C EGD1Q02642 157 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C CUR1Q06469 252 aa4.5□□□□□ -1.69
CDC48YDL126C YDL057WQ07379 328 aa4.5□□□□□ -1.69
CDC48YDL126C MCH5Q08777 521 aa4.5□□□□□ -1.69
CDC48YDL126C TRE1Q08919 783 aa4.5□□□□□ -1.69
CDC48YDL126C VPS54Q12071 889 aa4.5□□□□□ -1.69
CDC48YDL126C YDR215CQ12240 137 aa4.5□□□□□ -1.69
CDC48YDL126C RPN5Q12250 445 aaKnown RBP4.5□□□□□ -1.69
CDC48YDL126C KCS1Q12494 1050 aa4.5□□□□□ -1.69
CDC48YDL126C TCP1P12612 559 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C BET2P20133 325 aa4.49□□□□□ -1.69
CDC48YDL126C SIR1P21691 654 aa4.49□□□□□ -1.69
CDC48YDL126C ERV1P27882 189 aa4.49□□□□□ -1.69
CDC48YDL126C MAC1P35192 417 aa4.49□□□□□ -1.69
CDC48YDL126C SMF1P38925 575 aa4.49□□□□□ -1.69
CDC48YDL126C GDI1P39958 451 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C ZIM17P42844 174 aa4.49□□□□□ -1.69
CDC48YDL126C PEF1P53238 335 aa4.49□□□□□ -1.69
CDC48YDL126C ZPR1P53303 486 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C ECM7Q06200 448 aa4.49□□□□□ -1.69
CDC48YDL126C LEU9Q12166 604 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C MED4Q12343 284 aa4.49□□□□□ -1.69
CDC48YDL126C CET1O13297 549 aaPredicted RBP4.49□□□□□ -1.69
CDC48YDL126C IPP1P00817 287 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C ATP6P00854 259 aa4.49□□□□□ -1.69
CDC48YDL126C CAR2P07991 424 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C GCN3P14741 305 aa4.49□□□□□ -1.69
CDC48YDL126C PRE4P30657 266 aa4.49□□□□□ -1.69
CDC48YDL126C EFT1P32324 842 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C DOA4P32571 926 aa4.49□□□□□ -1.69
CDC48YDL126C UTR4P32626 227 aa4.49□□□□□ -1.69
CDC48YDL126C UBP5P39944 805 aa4.49□□□□□ -1.69
CDC48YDL126C AIM10P39965 576 aaKnown RBP4.49□□□□□ -1.69
CDC48YDL126C JLP2P40206 208 aa4.49□□□□□ -1.69
CDC48YDL126C MND2P40577 368 aa4.49□□□□□ -1.69
CDC48YDL126C PFA3P42836 336 aa4.49□□□□□ -1.69
CDC48YDL126C SSY5P47002 699 aa4.49□□□□□ -1.69
CDC48YDL126C PRY1P47032 299 aa4.49□□□□□ -1.69
CDC48YDL126C ALT2P52892 507 aa4.49□□□□□ -1.69
CDC48YDL126C TEL2P53038 688 aa4.49□□□□□ -1.69
CDC48YDL126C RPA49Q01080 415 aaPredicted RBP4.49□□□□□ -1.69
CDC48YDL126C PLB2Q03674 706 aa4.49□□□□□ -1.69
CDC48YDL126C MGR3Q04472 501 aa4.49□□□□□ -1.69
CDC48YDL126C SPE4Q12455 300 aa4.49□□□□□ -1.69
CDC48YDL126C SRN2Q99176 213 aa4.49□□□□□ -1.69
CDC48YDL126C HIS3P06633 220 aa4.48□□□□□ -1.69
CDC48YDL126C PPR1P07272 904 aaPredicted RBP4.48□□□□□ -1.69
Retrieved 100 of 5,963 RNA–protein pairs in 27 ms