RNA–Protein interactions for RNA: YDL084W

SUB2, Transcript of Component of the TREX complex required for nuclear mRNA export, yeast

Gene SUB2, Length 1,341 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SUB2	YDL084W	SIR1	P21691	654 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	CNB1	P25296	175 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	ARO4	P32449	370 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	GCD7	P32502	381 aa	Predicted RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	MNS1	P32906	549 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	RPT3	P33298	428 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	AST1	P35183	429 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	SNU114	P36048	1008 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	AGP2	P38090	596 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	ADH5	P38113	351 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	RFS1	P38234	210 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	ICS2	P38284	255 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	STB5	P38699	743 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	MUP3	P38734	546 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	YHR045W	P38775	560 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	MGS1	P40151	587 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	LRO1	P40345	661 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	DPH1	P40487	425 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	5.71	□□□□□ -1.5	not detected
SUB2	YDL084W	PSA1	P41940	361 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	HXT14	P42833	540 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	RPE1	P46969	238 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	NIT2	P47016	307 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	YJR111C	P47148	283 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	PAC10	P48363	199 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	CUE3	P53137	624 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	DUO1	P53168	247 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	IMP4	P53941	290 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	SKI8	Q02793	397 aa	Predicted RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	YDR476C	Q03362	224 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	FMP42	Q04991	504 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	YOL075C	Q08234	1294 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	FRE5	Q08908	694 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	RAD59	Q12223	238 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	ATG34	Q12292	412 aa		5.71	□□□□□ -1.5
SUB2	YDL084W	PNO1	Q99216	274 aa	Known RBP	5.71	□□□□□ -1.5
SUB2	YDL084W	NUP170	P38181	1502 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	SSK2	P53599	1579 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	SCC2	Q04002	1493 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	DST1	P07273	309 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	GLN4	P13188	809 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	MRPL33	P20084	86 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	AIM17	P23180	465 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	RBK1	P25332	333 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	CSM1	P25651	190 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	RAD14	P28519	371 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	CCR4	P31384	837 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	PRO3	P32263	286 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	GLY1	P37303	387 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	YBR184W	P38299	523 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	URA8	P38627	578 aa	Predicted RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	PCF11	P39081	626 aa	Predicted RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	MNN9	P39107	395 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	ECM10	P39987	644 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	GID8	P40208	455 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	SER33	P40510	469 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	SMK1	P41808	388 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	YGL138C	P53122	345 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	ARE2	P53629	642 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	CUS2	P53830	285 aa	Predicted RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	ORC3	P54790	616 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	REG1	Q00816	1014 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	PLM2	Q04383	521 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	AGE1	Q04412	482 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	ROY1	Q04847	553 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	PUS5	Q06244	254 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	ATG23	Q06671	453 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	YEH1	Q07804	573 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	NGL1	Q08213	363 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	SPE3	Q12074	293 aa	Known RBP	5.7	□□□□□ -1.5
SUB2	YDL084W	APC9	Q12107	265 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	YDR262W	Q12331	272 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	OCA6	Q12454	224 aa		5.7	□□□□□ -1.5
SUB2	YDL084W	CMD1	P06787	147 aa	Known RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	COS2	P0CX12	379 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	COS3	P0CX13	379 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	MAS1	P10507	462 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	ZWF1	P11412	505 aa	Known RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	CDC24	P11433	854 aa	Predicted RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	CDC34	P14682	295 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	IME1	P21190	360 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	URE2	P23202	354 aa	Known RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	IFM1	P25038	676 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	SGF29	P25554	259 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	PER1	P25625	357 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	PRP21	P32524	280 aa	Predicted RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	PTK1	P36002	662 aa	Predicted RBP	5.69	□□□□□ -1.5
SUB2	YDL084W	AIM29	P36154	155 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YBP1	P38315	674 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YBR287W	P38355	427 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YHL008C	P38750	627 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	SSU1	P41930	458 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	COS4	P43542	379 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YFR018C	P43599	363 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	IRC7	P43623	340 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	MRX6	P48564	524 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YGL082W	P53155	381 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	PKP2	P53170	491 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	YGR053C	P53234	283 aa		5.69	□□□□□ -1.5
SUB2	YDL084W	ZPR1	P53303	486 aa	Known RBP	5.69	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms