RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 IRF5Q13568 498 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 OTOP1Q7RTM1 612 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 ANKRD35Q8N283 1001 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 FAM133AQ8N9E0 248 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 CCDC148Q8NFR7 591 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 AIFM3Q96NN9 605 aa20.93■□□□□ 0.94
CCDC40-213ENST00000574933 COBLO75128 1261 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 XRCC5P13010 732 aaKnown RBP20.92■□□□□ 0.94
CCDC40-213ENST00000574933 RPS6P62753 249 aaKnown RBP20.92■□□□□ 0.94
CCDC40-213ENST00000574933 BAATQ14032 418 aaPredicted RBP20.92■□□□□ 0.94
CCDC40-213ENST00000574933 NSMFQ6X4W1 530 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 RNF207Q6ZRF8 634 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 TBC1D5Q92609 795 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 DDX11Q96FC9 970 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 ALG1Q9BT22 464 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 PSTPIP2Q9H939 334 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 RIC8AQ9NPQ8 531 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 GABRQQ9UN88 632 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 KIAA1217Q5T5P2 1943 aa20.92■□□□□ 0.94
CCDC40-213ENST00000574933 LRRC37A2A6NM11 1700 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 MEIS2O14770 477 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 DTNBO60941 627 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 RGS2P41220 211 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 PRKCZQ05513 592 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 ZNF792Q3KQV3 632 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 SLC5A4Q9NY91 659 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 VPS54Q9P1Q0 977 aa20.91■□□□□ 0.94
CCDC40-213ENST00000574933 LOC102724159A0A0B4J2E5 919 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 SMCO2A6NFE2 343 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 GCOM1H8Y6P7 765 aaPredicted RBP20.9■□□□□ 0.94
CCDC40-213ENST00000574933 CFBP00751 764 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 IGHA2P01877 340 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 POLR2MP0CAP2 368 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 XBP1P17861 261 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 FLT3LGP49771 235 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 ADCY7P51828 1080 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 MRPL12P52815 198 aaKnown RBP20.9■□□□□ 0.94
CCDC40-213ENST00000574933 PWP2Q15269 919 aaKnown RBP20.9■□□□□ 0.94
CCDC40-213ENST00000574933 GALNT17Q6IS24 598 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 SLC30A10Q6XR72 485 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 CTU1Q7Z7A3 348 aaKnown RBP20.9■□□□□ 0.94
CCDC40-213ENST00000574933 DAGLBQ8NCG7 672 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 SYTL5Q8TDW5 730 aaPredicted RBP20.9■□□□□ 0.94
CCDC40-213ENST00000574933 CUL5Q93034 780 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 FGD4Q96M96 766 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 APBA2Q99767 749 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 PHF20Q9BVI0 1012 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 KIF3AQ9Y496 699 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 TRIM17Q9Y577 477 aa20.9■□□□□ 0.94
CCDC40-213ENST00000574933 POTEB2H3BUK9 544 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 ECM2O94769 699 aaPredicted RBP20.89■□□□□ 0.93
CCDC40-213ENST00000574933 PGK2P07205 417 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 GNA11P29992 359 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 CLK2P49760 499 aaKnown RBP20.89■□□□□ 0.93
CCDC40-213ENST00000574933 NPY5RQ15761 445 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 ZNF467Q7Z7K2 595 aaPredicted RBP20.89■□□□□ 0.93
CCDC40-213ENST00000574933 DPP9Q86TI2 863 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 DNERQ8NFT8 737 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 C6orf50Q9HD87 102 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 SMC3Q9UQE7 1217 aa20.89■□□□□ 0.93
CCDC40-213ENST00000574933 CALML3P27482 149 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 GJB2P29033 226 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 CNTN2Q02246 1040 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 BECN1Q14457 450 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 MSL3Q8N5Y2 521 aaKnown RBP20.88■□□□□ 0.93
CCDC40-213ENST00000574933 FAM184AQ8NB25 1140 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 NPLOC4Q8TAT6 608 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 COL20A1Q9P218 1284 aa20.88■□□□□ 0.93
CCDC40-213ENST00000574933 ASTN1O14525 1302 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 FRMPD4Q14CM0 1322 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 SOWAHBA6NEL2 793 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 PKN2Q16513 984 aaKnown RBP20.87■□□□□ 0.93
CCDC40-213ENST00000574933 OLFML2BQ68BL8 750 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 MCTP2Q6DN12 878 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 USP17L6PQ6QN14 398 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 MAMDC4Q6UXC1 1216 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 TRMT44Q8IYL2 757 aaKnown RBP20.87■□□□□ 0.93
CCDC40-213ENST00000574933 BICD2Q8TD16 824 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 PXYLP1Q8TE99 480 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 ADD3Q9UEY8 706 aaKnown RBP20.87■□□□□ 0.93
CCDC40-213ENST00000574933 PTPN22Q9Y2R2 807 aa20.87■□□□□ 0.93
CCDC40-213ENST00000574933 M0R2N6 131 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 FOSP01100 380 aaPredicted RBP20.86■□□□□ 0.93
CCDC40-213ENST00000574933 CYP2B6P20813 491 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 HOXA13P31271 388 aaPredicted RBP20.86■□□□□ 0.93
CCDC40-213ENST00000574933 NLRP5P59047 1200 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 AP3B2Q13367 1082 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 KRT40Q6A162 431 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 FBXO18Q8NFZ0 1043 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 MORC4Q8TE76 937 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 MAML3Q96JK9 1138 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 C8orf76Q96K31 380 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 PCDHA4Q9UN74 947 aa20.86■□□□□ 0.93
CCDC40-213ENST00000574933 RPTORQ8N122 1335 aa20.85■□□□□ 0.93
CCDC40-213ENST00000574933 TAAR1Q96RJ0 339 aa20.85■□□□□ 0.93
CCDC40-213ENST00000574933 TSHZ2Q9NRE2 1034 aa20.85■□□□□ 0.93
CCDC40-213ENST00000574933 GJB4Q9NTQ9 266 aa20.85■□□□□ 0.93
CCDC40-213ENST00000574933 KCNJ14Q9UNX9 436 aa20.85■□□□□ 0.93
CCDC40-213ENST00000574933 ADAMTS3O15072 1205 aa20.84■□□□□ 0.93
CCDC40-213ENST00000574933 MMP1P03956 469 aa20.84■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms