RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 CHRNA4P43681 627 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 SOX9P48436 509 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 RASSF7Q02833 373 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 KCNMA1Q12791 1236 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 UVSSAQ2YD98 709 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 ZBTB37Q5TC79 503 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 CLEC4GQ6UXB4 293 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 Q6ZS46 218 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 CD163Q86VB7 1156 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 MARCH10Q8NA82 808 aaPredicted RBP7.66□□□□□ -1.18
VPS53-212ENST00000572259 UBL7Q96S82 380 aaPredicted RBP7.66□□□□□ -1.18
VPS53-212ENST00000572259 POLR3KQ9Y2Y1 108 aaPredicted RBP7.66□□□□□ -1.18
VPS53-212ENST00000572259 CORINQ9Y5Q5 1042 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 PARD3Q8TEW0 1356 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 NPC1L1Q9UHC9 1359 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 DISP2A7MBM2 1401 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 RGPD2P0DJD1 1756 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 SBF2Q86WG5 1849 aa7.66□□□□□ -1.18
VPS53-212ENST00000572259 BCL9O00512 1426 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 PLSCR1O15162 318 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 RAB6AP20340 208 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 CLCQ05315 142 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 TNS2Q63HR2 1409 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 SMYD4Q8IYR2 804 aaPredicted RBP7.65□□□□□ -1.18
VPS53-212ENST00000572259 KCT2Q8NC54 265 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 UTP4Q969X6 686 aaKnown RBP7.65□□□□□ -1.18
VPS53-212ENST00000572259 FAM46AQ96IP4 442 aaKnown RBP7.65□□□□□ -1.18
VPS53-212ENST00000572259 CEP89Q96ST8 783 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 FAM105AQ9NUU6 356 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 GNL3LQ9NVN8 582 aaKnown RBP7.65□□□□□ -1.18
VPS53-212ENST00000572259 PNMA2Q9UL42 364 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 STRIP2Q9ULQ0 834 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 PPT2Q9UMR5 302 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 COMMD10Q9Y6G5 202 aa7.65□□□□□ -1.18
VPS53-212ENST00000572259 LRRC37A3O60309 1634 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 PCDH11XQ9BZA7 1347 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 PCDH11YQ9BZA8 1340 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 HTR3BO95264 441 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 IMPDH2P12268 514 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 BMP3P12645 472 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 GATA4P43694 442 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 MTHFSP49914 203 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 RING1Q06587 406 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 CNGB1Q14028 1251 aaPredicted RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 EIF4A2Q14240 407 aaKnown RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 DZIP1LQ8IYY4 767 aaKnown RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 USHBP1Q8N6Y0 703 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 MEGF10Q96KG7 1140 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 SCYL1Q96KG9 808 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 CFAP53Q96M91 514 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 SRRTQ9BXP5 876 aaKnown RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 KCNF1Q9H3M0 494 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 GSX1Q9H4S2 264 aaPredicted RBP7.64□□□□□ -1.19
VPS53-212ENST00000572259 EHMT1Q9H9B1 1298 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 SIRPGQ9P1W8 387 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 PCOLCE2Q9UKZ9 415 aa7.64□□□□□ -1.19
VPS53-212ENST00000572259 DIAPH1O60610 1272 aaKnown RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 CDC45O75419 566 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 ATE1O95260 518 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 GDF11O95390 407 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 VIL1P09327 827 aaKnown RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 EIF6P56537 245 aaKnown RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 UBE4AQ14139 1066 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 EZH2Q15910 746 aaKnown RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 AMOTQ4VCS5 1084 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 PLEKHO1Q53GL0 409 aaPredicted RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 ARSHQ5FYA8 562 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 CCDC81Q6ZN84 652 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 C11orf96Q7Z7L8 435 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 HID1Q8IV36 788 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.63□□□□□ -1.19
VPS53-212ENST00000572259 ISL2Q96A47 359 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 SYTL4Q96C24 671 aaPredicted RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 CAMKK2Q96RR4 588 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 SRPK1Q96SB4 655 aaKnown RBP7.63□□□□□ -1.19
VPS53-212ENST00000572259 KRTAP9-2Q9BYQ4 174 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 REV1Q9UBZ9 1251 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 ADAM30Q9UKF2 790 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 NUDCQ9Y266 331 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 DAGLAQ9Y4D2 1042 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 PEAK1Q9H792 1746 aa7.63□□□□□ -1.19
VPS53-212ENST00000572259 PLEKHG2Q9H7P9 1386 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 DHX15O43143 795 aaKnown RBP7.62□□□□□ -1.19
VPS53-212ENST00000572259 WDHD1O75717 1129 aaPredicted RBP7.62□□□□□ -1.19
VPS53-212ENST00000572259 HSP90AB1P08238 724 aaKnown RBP7.62□□□□□ -1.19
VPS53-212ENST00000572259 FOXD4Q12950 439 aaPredicted RBP7.62□□□□□ -1.19
VPS53-212ENST00000572259 LRRFIP1Q32MZ4 808 aaKnown RBP7.62□□□□□ -1.19
VPS53-212ENST00000572259 SGO2Q562F6 1265 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 CDPF1Q6NVV7 123 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 FERMT3Q86UX7 667 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 IFNL2Q8IZJ0 200 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 TMEM151AQ8N4L1 468 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 FBLIM1Q8WUP2 373 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 ANAPC16Q96DE5 110 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 MYRFLQ96LU7 910 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 SENP7Q9BQF6 1050 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 TCEAL9Q9UHQ7 104 aa7.62□□□□□ -1.19
VPS53-212ENST00000572259 TNS1Q9HBL0 1735 aaKnown RBP7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms