RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PTCH2Q9Y6C5 1203 aa12.56□□□□□ -0.4
SHMT2-218ENST00000555213 V9GY48 417 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-218ENST00000555213 PLXNB2O15031 1838 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 hCG_1642624A0A1W2PR95 340 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 NFIBO00712 420 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PRPF3O43395 683 aaKnown RBP12.55□□□□□ -0.4
SHMT2-218ENST00000555213 ADCY3O60266 1144 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PPP1R11O60927 126 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PPFIA3O75145 1194 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PGK2P07205 417 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 SCG2P13521 617 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 TAL1P17542 331 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-218ENST00000555213 NAPAP54920 295 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 CAP1Q01518 475 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 CLEC17AQ6ZS10 378 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 SAMD3Q8N6K7 520 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 RGS22Q8NE09 1264 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PXYLP1Q8TE99 480 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 CCDC12Q8WUD4 166 aaPredicted RBP12.55□□□□□ -0.4
SHMT2-218ENST00000555213 CUL5Q93034 780 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 PHKBQ93100 1093 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 MCOLN1Q9GZU1 580 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 CYP39A1Q9NYL5 469 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 GJD2Q9UKL4 321 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 MTMR6Q9Y217 621 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 DIS3Q9Y2L1 958 aaKnown RBP12.55□□□□□ -0.4
SHMT2-218ENST00000555213 STK36Q9NRP7 1315 aa12.55□□□□□ -0.4
SHMT2-218ENST00000555213 B4DLN1 442 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 DEXIO95424 95 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 HMGCRP04035 888 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 CALML3P27482 149 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 GRK4P32298 578 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 MRPL12P52815 198 aaKnown RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 NUCB2P80303 420 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 MLLT1Q03111 559 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 PFKFB3Q16875 520 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 MFSD14CQ5VZR4 134 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 TEX2Q8IWB9 1127 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 CCDC148Q8NFR7 591 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 CLEC4DQ8WXI8 215 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 WASF1Q92558 559 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 USP6NLQ92738 828 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 GLT8D2Q9H1C3 349 aa12.54□□□□□ -0.4
SHMT2-218ENST00000555213 MAP3K20Q9NYL2 800 aaKnown RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 BIN2Q9UBW5 565 aaPredicted RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 ADD3Q9UEY8 706 aaKnown RBP12.54□□□□□ -0.4
SHMT2-218ENST00000555213 DNAJC25-GNG10A0A024R161 153 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 GCOM1H8Y6P7 765 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 STX6O43752 255 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 COBLO75128 1261 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 CFBP00751 764 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 POLR2MP0CAP2 368 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 XBP1P17861 261 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 RPS6P62753 249 aaKnown RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 UBXN2AP68543 259 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 BAATQ14032 418 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 OLFML2BQ68BL8 750 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 WWC2Q6AWC2 1192 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 SLC30A10Q6XR72 485 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 ZNF467Q7Z7K2 595 aaPredicted RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 MSL3Q8N5Y2 521 aaKnown RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 GPKOWQ92917 476 aaPredicted RBP eCLIP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 CHAMP1Q96JM3 812 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 BARHL2Q9NY43 387 aa12.53□□□□□ -0.4
SHMT2-218ENST00000555213 RBBP6Q7Z6E9 1792 aaKnown RBP12.53□□□□□ -0.4
SHMT2-218ENST00000555213 LOC102724159A0A0B4J2E5 919 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 ELNP15502 786 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 RGS19P49795 217 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 ADCY7P51828 1080 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 PWP2Q15269 919 aaKnown RBP12.52□□□□□ -0.41
SHMT2-218ENST00000555213 ZNF792Q3KQV3 632 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 LARP1BQ659C4 914 aaKnown RBP12.52□□□□□ -0.41
SHMT2-218ENST00000555213 FAM177A1Q8N128 213 aaPredicted RBP12.52□□□□□ -0.41
SHMT2-218ENST00000555213 FAM133AQ8N9E0 248 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 TRIB2Q92519 343 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 MAML3Q96JK9 1138 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 PSTPIP2Q9H939 334 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 MYH6P13533 1939 aa12.52□□□□□ -0.41
SHMT2-218ENST00000555213 ESYT2A0FGR8 921 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 ASB14A6NK59 587 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 STXBP3O00186 592 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 INHAP05111 366 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 ZSCAN22P10073 491 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-218ENST00000555213 GNA11P29992 359 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 HSD17B4P51659 736 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 HMGN5P82970 282 aaKnown RBP12.51□□□□□ -0.41
SHMT2-218ENST00000555213 CNTN2Q02246 1040 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 GHRHRQ02643 423 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 NFKBIBQ15653 356 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 DNERQ8NFT8 737 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 NPLOC4Q8TAT6 608 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 BICD2Q8TD16 824 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 SHISA4Q96DD7 197 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 AIFM3Q96NN9 605 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 EHMT1Q9H9B1 1298 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 C6orf50Q9HD87 102 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 SH3GLB2Q9NR46 395 aa12.51□□□□□ -0.41
SHMT2-218ENST00000555213 ORC3Q9UBD5 711 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-218ENST00000555213 KIF3AQ9Y496 699 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms