RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 TTLL4Q14679 1199 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 B4GALNT3Q6L9W6 998 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 TAPT1Q6NXT6 567 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 FAM160B2Q86V87 743 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 PLEKHM2Q8IWE5 1019 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 PHOSPHO2Q8TCD6 241 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 STAG1Q8WVM7 1258 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 VWCEQ96DN2 955 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 CEP95Q96GE4 821 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 NACAP1Q9BZK3 213 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 ALDH8A1Q9H2A2 487 aaPredicted RBP13.98□□□□□ -0.17
SRP54-203ENST00000553544 PDGFCQ9NRA1 345 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 RNF146Q9NTX7 359 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 ISY1Q9ULR0 285 aaKnown RBP13.98□□□□□ -0.17
SRP54-203ENST00000553544 TRANK1O15050 2925 aa13.98□□□□□ -0.17
SRP54-203ENST00000553544 REV3LO60673 3130 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 KIF28PB7ZC32 967 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 TLL1O43897 1013 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 PRDM1O75626 825 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 IKQ13123 557 aaPredicted RBP13.97□□□□□ -0.17
SRP54-203ENST00000553544 TMEM31Q5JXX7 168 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 KIAA1211Q6ZU35 1233 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 EEPD1Q7L9B9 569 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 DEFB128Q7Z7B8 93 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 LRRC47Q8N1G4 583 aaKnown RBP13.97□□□□□ -0.17
SRP54-203ENST00000553544 HLA-CQ95604 372 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 CERS4Q9HA82 394 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 HELLSQ9NRZ9 838 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 POLR3EQ9NVU0 708 aa13.97□□□□□ -0.17
SRP54-203ENST00000553544 TCF20Q9UGU0 1960 aaKnown RBP13.96□□□□□ -0.17
SRP54-203ENST00000553544 TSPY3P0CV98 308 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 TSPY8P0CW00 308 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 CYP2C9P11712 490 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 ALAS1P13196 640 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 RFC2P35250 354 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 SLC1A4P43007 532 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 RETREG2Q8NC44 543 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 NEDD1Q8NHV4 660 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 SLC9A7Q96T83 725 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 NAPBQ9H115 298 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 VTA1Q9NP79 307 aa13.96□□□□□ -0.17
SRP54-203ENST00000553544 GPHNQ9NQX3 736 aaPredicted RBP13.96□□□□□ -0.17
SRP54-203ENST00000553544 TRMT13Q9NUP7 481 aaKnown RBP13.96□□□□□ -0.17
SRP54-203ENST00000553544 PRRC2BQ5JSZ5 2229 aaKnown RBP13.95□□□□□ -0.18
SRP54-203ENST00000553544 ZNF536O15090 1300 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 TNKSO95271 1327 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 PLA2G6O60733 806 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 PTGS1P23219 599 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 MCCP23508 829 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 PDE4BQ07343 736 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 PPARAQ07869 468 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 ALX1Q15699 326 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 DUSP28Q4G0W2 176 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 VPS53Q5VIR6 699 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 FBXO16Q8IX29 292 aaPredicted RBP13.95□□□□□ -0.18
SRP54-203ENST00000553544 ARNTL2Q8WYA1 636 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 GMCL1Q96IK5 515 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 FAM227BQ96M60 508 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 FTOQ9C0B1 505 aaKnown RBP eCLIP13.95□□□□□ -0.18
SRP54-203ENST00000553544 CYP39A1Q9NYL5 469 aa13.95□□□□□ -0.18
SRP54-203ENST00000553544 LAMA4Q16363 1823 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 A0A0D9SFI3 127 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 GPR37L1O60883 481 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 SLC3A2P08195 630 aaKnown RBP13.94□□□□□ -0.18
SRP54-203ENST00000553544 CPT1AP50416 773 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 TFAP4Q01664 338 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 MCMDC2Q4G0Z9 681 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 BRDTQ58F21 947 aaPredicted RBP13.94□□□□□ -0.18
SRP54-203ENST00000553544 PPP4R3BQ5MIZ7 849 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 TMEM63BQ5T3F8 832 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 RCSD1Q6JBY9 416 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 MORC4Q8TE76 937 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 MTG1Q9BT17 334 aaPredicted RBP13.94□□□□□ -0.18
SRP54-203ENST00000553544 WDR11Q9BZH6 1224 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 ADD3Q9UEY8 706 aaKnown RBP13.94□□□□□ -0.18
SRP54-203ENST00000553544 ANAPC4Q9UJX5 808 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.94□□□□□ -0.18
SRP54-203ENST00000553544 DDX49Q9Y6V7 483 aaKnown RBP13.94□□□□□ -0.18
SRP54-203ENST00000553544 PLIN4Q96Q06 1357 aa13.94□□□□□ -0.18
SRP54-203ENST00000553544 MCM3APO60318 1980 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 TRIM6-TRIM34B2RNG4 842 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 KPNA6O60684 536 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 MYL3P08590 195 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 FGRP09769 529 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 IQCF3P0C7M6 154 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 PURAQ00577 322 aaKnown RBP13.93□□□□□ -0.18
SRP54-203ENST00000553544 TAP1Q03518 808 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 KRT40Q6A162 431 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 NSMFQ6X4W1 530 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 HERC6Q8IVU3 1022 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 CHMP4CQ96CF2 233 aa13.93□□□□□ -0.18
SRP54-203ENST00000553544 EPOPA6NHQ4 379 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 PITPNM1O00562 1244 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 FGAP02671 866 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 SDSP20132 328 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 SNAP25P60880 206 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 NMIQ13287 307 aaPredicted RBP13.92□□□□□ -0.18
SRP54-203ENST00000553544 BFSP2Q13515 415 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 NBPF20Q3BBV1 942 aa13.92□□□□□ -0.18
SRP54-203ENST00000553544 MUM1L1Q5H9M0 696 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms