RNA–Protein interactions for RNA: ENST00000543233.2

CDH4-201, Transcript of cadherin 4, humanhuman

TSL 2 BASIC

Gene CDH4, Length 3,117 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4-201ENST00000543233 CLTAP09496 248 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 FERP16591 822 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 CUL3Q13618 768 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 NTRK3Q16288 839 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 SND1Q7KZF4 910 aaKnown RBP eCLIP12.5□□□□□ -0.41
CDH4-201ENST00000543233 OXER1Q8TDS5 423 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 CAPZA3Q96KX2 299 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 NUP58Q9BVL2 599 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 POLR3EQ9NVU0 708 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 PAPPAQ13219 1627 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 FAM205CA6NFA0 338 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 FOXN1O15353 648 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 NMT2O60551 498 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 FAM47AQ5JRC9 791 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 TRIM68Q6AZZ1 485 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 CC2D2BQ6DHV5 1058 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 TRIM22Q8IYM9 498 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 CPLX3Q8WVH0 158 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 MINPP1Q9UNW1 487 aa12.5□□□□□ -0.41
CDH4-201ENST00000543233 DIAPH2O60879 1101 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 ZNF189O75820 626 aaPredicted RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 RNF8O76064 485 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 YEATS4O95619 227 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 POLE2P56282 527 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 SAFBQ15424 915 aaKnown RBP eCLIP12.49□□□□□ -0.41
CDH4-201ENST00000543233 RBM41Q96IZ5 413 aaKnown RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 GORASP1Q9BQQ3 440 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 KRT23Q9C075 422 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 ACTR5Q9H9F9 607 aaPredicted RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 PPANQ9NQ55 473 aaKnown RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 VPS54Q9P1Q0 977 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 C15orf41Q9Y2V0 281 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 AKAP11Q9UKA4 1901 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 TNKSO95271 1327 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 ATXN2Q99700 1313 aaKnown RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 ABCC12Q96J65 1359 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 NUP98P52948 1817 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 SOWAHDA6NJG2 315 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 USP17L12C9JPN9 530 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 USP17L21D6R901 530 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 PRDX5P30044 214 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 IFFO1Q0D2I5 559 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 SHC4Q6S5L8 630 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 AMIGO3Q86WK7 504 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 ZNF654Q8IZM8 581 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 CAGE1Q8TC20 777 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 NAPGQ99747 312 aaPredicted RBP12.49□□□□□ -0.41
CDH4-201ENST00000543233 SPATA31A5Q5VU36 1347 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 SPATA31A7Q8IWB4 1347 aa12.49□□□□□ -0.41
CDH4-201ENST00000543233 AGPSO00116 658 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 ZPR1O75312 459 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 LRP6O75581 1613 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 MCM3P25205 808 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 TUBB4BP68371 445 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 SF3A3Q12874 501 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDH4-201ENST00000543233 SLC39A14Q15043 492 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 ZNF827Q17R98 1081 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 TXNRD3Q86VQ6 643 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 GRAMD1CQ8IYS0 662 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 ARHGEF1Q92888 912 aaKnown RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 FAM84BQ96KN1 310 aaPredicted RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 SETDB2Q96T68 719 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDH4-201ENST00000543233 OSBPL1AQ9BXW6 950 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 IQCGQ9H095 443 aaKnown RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 CABP5Q9NP86 173 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 CORO1CQ9ULV4 474 aaPredicted RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 OPA1O60313 960 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 ATP6V1G2O95670 118 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 LINGO3P0C6S8 592 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 CYP2D6P10635 497 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 TMEM62Q0P6H9 643 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 ATL3Q6DD88 541 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 VSTM4Q8IW00 320 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 FBXL16Q8N461 479 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 CDCA7Q9BWT1 371 aaPredicted RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 CNNM2Q9H8M5 875 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.48□□□□□ -0.41
CDH4-201ENST00000543233 GOLGA8KD6RF30 607 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 LSP1P33241 339 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 PDIA5Q14554 519 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 CUL5Q93034 780 aa12.48□□□□□ -0.41
CDH4-201ENST00000543233 DNAAF2Q9NVR5 837 aaKnown RBP12.48□□□□□ -0.41
CDH4-201ENST00000543233 STX10O60499 249 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 LONRF3Q496Y0 759 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 FANCBQ8NB91 859 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 ATL2Q8NHH9 583 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 ARL8AQ96BM9 186 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 RBM17Q96I25 401 aaKnown RBP12.47□□□□□ -0.41
CDH4-201ENST00000543233 NLRP3Q96P20 1036 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 PCDHB6Q9Y5E3 794 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 V9GY48 417 aaPredicted RBP12.47□□□□□ -0.41
CDH4-201ENST00000543233 A0A1W2PQ27 194 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 A0A1W2PQ64 194 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 A0A1W2PQD8 194 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 PLEKHA8P1O95397 391 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 ATP4AP20648 1035 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 RPS8P62241 208 aaKnown RBP12.47□□□□□ -0.41
CDH4-201ENST00000543233 WHAMMP3Q1A5X7 153 aa12.47□□□□□ -0.41
CDH4-201ENST00000543233 WDR93Q6P2C0 686 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 725.9 ms