RNA–Protein interactions for RNA: ENST00000539232.1

LMO3-220, Transcript of LIM domain only 3, humanhuman

TSL 5

Gene LMO3, Length 580 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-220ENST00000539232 NECTIN1Q15223 517 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 ADCK5Q3MIX3 580 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 NSMFQ6X4W1 530 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.47□□□□□ -1.05
LMO3-220ENST00000539232 TRMT44Q8IYL2 757 aaKnown RBP8.47□□□□□ -1.05
LMO3-220ENST00000539232 ADGRF4Q8IZF3 695 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 ANKRD35Q8N283 1001 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 CHST13Q8NET6 341 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 RUFY2Q8WXA3 655 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 BADQ92934 168 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 TIFAQ96CG3 184 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 DDX11Q96FC9 970 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 KRT23Q9C075 422 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 ACAD9Q9H845 621 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 KAT14Q9H8E8 782 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 PDGFCQ9NRA1 345 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 CYP39A1Q9NYL5 469 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 COL20A1Q9P218 1284 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 MAD2L2Q9UI95 211 aa8.47□□□□□ -1.05
LMO3-220ENST00000539232 PKD1L2Q7Z442 2459 aa8.46□□□□□ -1.05
LMO3-220ENST00000539232 CFAP54Q96N23 3096 aa8.46□□□□□ -1.05
LMO3-220ENST00000539232 IFIT3O14879 490 aaKnown RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 CTAGE5O15320 804 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 SEPT4O43236 478 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 PRC1O43663 620 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 CYTH3O43739 400 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 MYCNP04198 464 aaPredicted RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 RXRAP19793 462 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 KCNQ1P51787 676 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 ATN1P54259 1190 aaPredicted RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 QRICH1Q2TAL8 776 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 USH1GQ495M9 461 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 TMEM67Q5HYA8 995 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 MAMDC4Q6UXC1 1216 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 ARMCX2Q7L311 632 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 EEPD1Q7L9B9 569 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 IQCA1Q86XH1 822 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 CCDC144CPQ8IYA2 1237 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 CMTR1Q8N1G2 835 aaKnown RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 PIBF1Q8WXW3 757 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 FERMT2Q96AC1 680 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 FBXL18Q96ME1 805 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 UBAC1Q9BSL1 405 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 SENP6Q9GZR1 1112 aaPredicted RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 PRDM12Q9H4Q4 367 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 LY9Q9HBG7 655 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 CTDP1Q9Y5B0 961 aaPredicted RBP8.46□□□□□ -1.06
LMO3-220ENST00000539232 A0A0G2JMZ2 1700 aa8.46□□□□□ -1.06
LMO3-220ENST00000539232 hCG_1642624A0A1W2PR95 340 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 PALM3A6NDB9 673 aaPredicted RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 CDC45O75419 566 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 ADCYAP1R1P41586 468 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 RTP1P59025 263 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 TFF2Q03403 129 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 TROAPQ12815 778 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 ACVR2BQ13705 512 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 GRM4Q14833 912 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 LRRC41Q15345 812 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 CDC37Q16543 378 aaPredicted RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 PPP4R3BQ5MIZ7 849 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 IFIT1BQ5T764 474 aaKnown RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 FBXO16Q8IX29 292 aaPredicted RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 KHSRPQ92945 711 aaKnown RBP eCLIP8.45□□□□□ -1.06
LMO3-220ENST00000539232 ZFP91Q96JP5 570 aaPredicted RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 CNNM2Q9H8M5 875 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 ZHX1Q9UKY1 873 aaPredicted RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 BRPF3Q9ULD4 1205 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 DIS3Q9Y2L1 958 aaKnown RBP8.45□□□□□ -1.06
LMO3-220ENST00000539232 FRMPD3Q5JV73 1810 aa8.45□□□□□ -1.06
LMO3-220ENST00000539232 MYH7P12883 1935 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 KLRF2D3W0D1 207 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 SH2B2O14492 632 aaPredicted RBP8.44□□□□□ -1.06
LMO3-220ENST00000539232 ADAMTS4O75173 837 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 PLEKHA8P1O95397 391 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 PARP1P09874 1014 aaKnown RBP8.44□□□□□ -1.06
LMO3-220ENST00000539232 SMPD1P17405 629 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 IGFBP4P22692 258 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 CALML3P27482 149 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 COPB2P35606 906 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 ADGRE1Q14246 886 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 CCDC144BQ3MJ40 725 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 CCSAPQ6IQ19 270 aaPredicted RBP8.44□□□□□ -1.06
LMO3-220ENST00000539232 TAPT1Q6NXT6 567 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 KIAA1211Q6ZU35 1233 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 NCOA7Q8NI08 942 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 PPP1R13LQ8WUF5 828 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 MTMR8Q96EF0 704 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 TAAR1Q96RJ0 339 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 PIGSQ96S52 555 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 FBXO40Q9UH90 709 aa8.44□□□□□ -1.06
LMO3-220ENST00000539232 CHD9Q3L8U1 2897 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 WDFY4Q6ZS81 3184 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 PLXNA1Q9UIW2 1896 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 PTPDC1A2A3K4 754 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 DTNBO60941 627 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 FDX1P10109 184 aa8.43□□□□□ -1.06
LMO3-220ENST00000539232 HOXA13P31271 388 aaPredicted RBP8.43□□□□□ -1.06
LMO3-220ENST00000539232 RPS6P62753 249 aaKnown RBP8.43□□□□□ -1.06
LMO3-220ENST00000539232 BEX3Q00994 111 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms