RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 IQSEC1Q6DN90 963 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 TAPT1Q6NXT6 567 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 FBXO11Q86XK2 927 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 STAG2Q8N3U4 1231 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 DNERQ8NFT8 737 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 AP5M1Q9H0R1 490 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 JMJD4Q9H9V9 463 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 VAT1LQ9HCJ6 419 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 PDGFCQ9NRA1 345 aa15.51■□□□□ 0.07
VPS28-211ENST00000530790 GNEQ9Y223 722 aaKnown RBP15.51■□□□□ 0.07
VPS28-211ENST00000530790 MROH7Q68CQ1 1323 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 A0A0U1RQG5 324 aaPredicted RBP15.5■□□□□ 0.07
VPS28-211ENST00000530790 KLRF2D3W0D1 207 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 NKX3-2P78367 333 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 BEX3Q00994 111 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 GRM4Q14833 912 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 FSCN1Q16658 493 aaKnown RBP15.5■□□□□ 0.07
VPS28-211ENST00000530790 TMEM67Q5HYA8 995 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 CHST3Q7LGC8 479 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 SKAP1Q86WV1 359 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 MCF2L2Q86YR7 1114 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 MB21D2Q8IYB1 491 aaPredicted RBP15.5■□□□□ 0.07
VPS28-211ENST00000530790 RGS22Q8NE09 1264 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 VTI1AQ96AJ9 217 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 MAF1Q9H063 256 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 LSG1Q9H089 658 aaKnown RBP15.5■□□□□ 0.07
VPS28-211ENST00000530790 ANO2Q9NQ90 1003 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 MAD2L2Q9UI95 211 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 MRPL11Q9Y3B7 192 aaKnown RBP15.5■□□□□ 0.07
VPS28-211ENST00000530790 LAMA3Q16787 3333 aa15.5■□□□□ 0.07
VPS28-211ENST00000530790 DCDC2CA8MYV0 355 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 SOX1O00570 391 aaPredicted RBP15.49■□□□□ 0.07
VPS28-211ENST00000530790 ZBTB5O15062 677 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 CTAGE5O15320 804 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 ZEB2O60315 1214 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 EDNRBP24530 442 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 LRIT3Q3SXY7 679 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 CASC1Q6TDU7 716 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 ANKRD33Q7Z3H0 272 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 SH3RF1Q7Z6J0 888 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 CATIPQ7Z7H3 387 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 TOX2Q96NM4 488 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 AMNQ9BXJ7 453 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 Q9Y3F1 56 aa15.49■□□□□ 0.07
VPS28-211ENST00000530790 TRIM43BA6NCK2 446 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 PALM3A6NDB9 673 aaPredicted RBP15.48■□□□□ 0.07
VPS28-211ENST00000530790 DYNC1LI2O43237 492 aaPredicted RBP15.48■□□□□ 0.07
VPS28-211ENST00000530790 ANTXR2P58335 489 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 PPP2R5BQ15173 497 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 DUSP28Q4G0W2 176 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 HOMER1Q86YM7 354 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 SCFD2Q8WU76 684 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 BADQ92934 168 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 TRIM43Q96BQ3 446 aaPredicted RBP15.48■□□□□ 0.07
VPS28-211ENST00000530790 LRCH3Q96II8 777 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 CCDC136Q96JN2 1154 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 WDR11Q9BZH6 1224 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 SENP2Q9HC62 589 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 TMEM39AQ9NV64 488 aa15.48■□□□□ 0.07
VPS28-211ENST00000530790 SLC27A2O14975 620 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 KIAA0355O15063 1070 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 CABYRO75952 493 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 RAG1P15918 1043 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 PTGS1P23219 599 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 FAAP100Q0VG06 881 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 TRAF1Q13077 416 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 CXCL17Q6UXB2 119 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 SYTL5Q8TDW5 730 aaPredicted RBP15.47■□□□□ 0.07
VPS28-211ENST00000530790 NSUN6Q8TEA1 469 aaKnown RBP15.47■□□□□ 0.07
VPS28-211ENST00000530790 MTMR8Q96EF0 704 aa15.47■□□□□ 0.07
VPS28-211ENST00000530790 RBM47A0AV96 593 aaKnown RBP15.46■□□□□ 0.07
VPS28-211ENST00000530790 ARVCFO00192 962 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 NKRFO15226 690 aaKnown RBP eCLIP15.46■□□□□ 0.07
VPS28-211ENST00000530790 TLR3O15455 904 aaKnown RBP15.46■□□□□ 0.07
VPS28-211ENST00000530790 PRC1O43663 620 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 CDC45O75419 566 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 DDAH1O94760 285 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 CFBP00751 764 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 MCM5P33992 734 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 CPT1AP50416 773 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 TROAPQ12815 778 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 TMEM63BQ5T3F8 832 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 CREB3L3Q68CJ9 461 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 IGDCC4Q8TDY8 1250 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 MTA3Q9BTC8 594 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 LY9Q9HBG7 655 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 COL20A1Q9P218 1284 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 PCDHA1Q9Y5I3 950 aa15.46■□□□□ 0.07
VPS28-211ENST00000530790 PPP1R11O60927 126 aaPredicted RBP15.45■□□□□ 0.06
VPS28-211ENST00000530790 KIF5BP33176 963 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 CDK7P50613 346 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 NECTIN1Q15223 517 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 BRDTQ58F21 947 aaPredicted RBP15.45■□□□□ 0.06
VPS28-211ENST00000530790 RNF20Q5VTR2 975 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 ARHGEF16Q5VV41 709 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 NFXL1Q6ZNB6 911 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 ZNF654Q8IZM8 581 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 OR6J1Q8NGC5 347 aa15.45■□□□□ 0.06
VPS28-211ENST00000530790 CTCFLQ8NI51 663 aaPredicted RBP15.45■□□□□ 0.06
VPS28-211ENST00000530790 TBC1D5Q92609 795 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms