RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SNRKQ9NRH2 765 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ATXN10Q9UBB4 475 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 SERPINB4P48594 390 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 SARSP49591 514 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 RASA3Q14644 834 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 IMMTQ16891 758 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 RUFY4Q6ZNE9 571 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 USP49Q70CQ1 688 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 DDX46Q7L014 1031 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 UCMAQ8WVF2 138 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ARHGEF1Q92888 912 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 XPO6Q96QU8 1125 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ZNF510Q9Y2H8 683 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ATP7BP35670 1465 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 SMAPO00193 183 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 FLOT1O75955 427 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 RXRAP19793 462 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 GSTT1P30711 240 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 IFNAR2P48551 515 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 BPIFB4P59827 614 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 INF2Q27J81 1249 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 CDKAL1Q5VV42 579 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 FAM47EQ6ZV65 393 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 KLHL7Q8IXQ5 586 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 LRRC34Q8IZ02 419 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 KLHDC4Q8TBB5 520 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 PCMTD1Q96MG8 357 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 DDX23Q9BUQ8 820 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ZNHIT6Q9NWK9 470 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ADGRB1O14514 1584 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 ITIH6Q6UXX5 1313 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 ADAMTS12P58397 1594 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 NPM1P06748 294 aaKnown RBP eCLIP13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 ZNF24P17028 368 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 RNASELQ05823 741 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 LBRQ14739 615 aaKnown RBP13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 SEPT2Q15019 361 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 MCMDC2Q4G0Z9 681 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 WDR59Q6PJI9 974 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 MIGA2Q7L4E1 593 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 CHMP7Q8WUX9 453 aaPredicted RBP13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 HYOU1Q9Y4L1 999 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 CETN3O15182 167 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 RARAP10276 462 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 HAND2P61296 217 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 USP46P62068 366 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 ZNF844Q08AG5 666 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 CCNJLQ8IV13 435 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 SLX1AQ9BQ83 275 aa13.24□□□□□ -0.29
LIMCH1-213ENST00000511496 CEMIPQ8WUJ3 1361 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 GBP1P32455 592 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 EIF4A2Q14240 407 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 KRT40Q6A162 431 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 TSHZ1Q6ZSZ6 1077 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 LCA5Q86VQ0 697 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 TRIML1Q8N9V2 468 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 RUBCNQ92622 972 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 ABTB1Q969K4 478 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 NHEJ1Q9H9Q4 299 aaPredicted RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SCOCQ9UIL1 159 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 TCP1P17987 556 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 INHBCP55103 352 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SESN3P58005 492 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SPA17Q15506 151 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 CACNA2D4Q7Z3S7 1137 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 DDX42Q86XP3 938 aaKnown RBP eCLIP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 RNF10Q8N5U6 811 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 COG3Q96JB2 828 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 GBP5Q96PP8 586 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 GDF3Q9NR23 364 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 MMEP08473 750 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 TRIM14Q14142 442 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SETDB1Q15047 1291 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 MUM1Q2TAK8 710 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 BICDL1Q6ZP65 573 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 RETREG2Q8NC44 543 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 WHAMMQ8TF30 809 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SNRNP27Q8WVK2 155 aaKnown RBP13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 TSPAN18Q96SJ8 248 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 MYH15Q9Y2K3 1946 aa13.23□□□□□ -0.29
LIMCH1-213ENST00000511496 SMIM23A6NLE4 172 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 HNRNPRO43390 633 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 SUPT3HO75486 399 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 ATP6V1C1P21283 382 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 GJA8P48165 433 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CCDC15Q0P6D6 951 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 PABPC1LQ4VXU2 614 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 FOXB2Q5VYV0 432 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 LINS1Q8NG48 757 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 DDX27Q96GQ7 796 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 MAP3K14Q99558 947 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 LBHD1Q9BQE6 289 aaPredicted RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 TRIM7Q9C029 511 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 AGPAT5Q9NUQ2 364 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 PNMA2Q9UL42 364 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CHMP2BQ9UQN3 213 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 LRRC42Q9Y546 428 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 TLDC2A0PJX2 215 aa13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 USO1O60763 962 aaKnown RBP13.22□□□□□ -0.29
LIMCH1-213ENST00000511496 CUL4BQ13620 913 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms