RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 UGGT2Q9NYU1 1516 aa11.55□□□□□ -0.56
SRGAP3-207ENST00000485983 RGS16O15492 202 aaPredicted RBP11.55□□□□□ -0.56
SRGAP3-207ENST00000485983 ATXN8OSP0DMR3 200 aa11.55□□□□□ -0.56
SRGAP3-207ENST00000485983 GTF2A1P52655 376 aaPredicted RBP11.55□□□□□ -0.56
SRGAP3-207ENST00000485983 SLITRK6Q9H5Y7 841 aa11.55□□□□□ -0.56
SRGAP3-207ENST00000485983 PNMA6EA0A0J9YXQ4 647 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 GPC4O75487 556 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 TTLL1O95922 423 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 MYLK4Q86YV6 388 aaPredicted RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 RTKN2Q8IZC4 609 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 PPP1R12CQ9BZL4 782 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 LRRC4Q9HBW1 653 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 ZNF148Q9UQR1 794 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 ATP10AO60312 1499 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 IRX4P78413 519 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 TRMT44Q8IYL2 757 aaKnown RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 TRIM58Q8NG06 486 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 CABS1Q96KC9 395 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 DBNDD1Q9H9R9 158 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 SLC38A10Q9HBR0 1119 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 BLMP54132 1417 aaPredicted RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 KCNJ18B7U540 433 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 MTX1Q13505 466 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 KCNJ12Q14500 433 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 KRT33BQ14525 404 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 RNF139Q8WU17 664 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 PGBD1Q96JS3 809 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 DHX36Q9H2U1 1008 aaKnown RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 PPFIA4O75335 1185 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 RAD17O75943 681 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 H2AFZP0C0S5 128 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 MYSM1Q5VVJ2 828 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 ADALQ6DHV7 355 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 H2AFVQ71UI9 128 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 ANKRD42Q8N9B4 389 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 OTUD7AQ8TE49 926 aaPredicted RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 GPKOWQ92917 476 aaPredicted RBP eCLIP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 KMT5AQ9NQR1 393 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 DDX41Q9UJV9 622 aaKnown RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 COL17A1Q9UMD9 1497 aaPredicted RBP11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 PARD3Q8TEW0 1356 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 WDR62O43379 1518 aa11.54□□□□□ -0.56
SRGAP3-207ENST00000485983 KRIT1O00522 736 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 VPS41P49754 854 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 MKRN3Q13064 507 aaKnown RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 DBN1Q16643 649 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 TTC31Q49AM3 519 aaPredicted RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 TRIML1Q8N9V2 468 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 SDCCAG3Q96C92 435 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 FAM81BQ96LP2 452 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 EIF2AK4Q9P2K8 1649 aaKnown RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 KCNK3O14649 394 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 IL6STP40189 918 aaPredicted RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 EPHB1P54762 984 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 MYO1EQ12965 1108 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 NDUFAF2Q8N183 169 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 CMTR1Q8N1G2 835 aaKnown RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 RPGRIP1Q96KN7 1286 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 CARD6Q9BX69 1037 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 PPFIA1Q13136 1202 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 MORC3Q14149 939 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 CCDC13Q8IYE1 715 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 GDAP1Q8TB36 358 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 GJA10Q969M2 543 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 TM6SF1Q9BZW5 370 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 FTOQ9C0B1 505 aaKnown RBP eCLIP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 MYO1FO00160 1098 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 BMP3P12645 472 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 ARMCX2Q7L311 632 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 CEP170P1Q96L14 293 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 HOMER3Q9NSC5 361 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 FAM170AA1A519 330 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 EIF3CLB5ME19 914 aaKnown RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 JAK2O60674 1132 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 GAP43P17677 238 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 PPP1R2P3Q6NXS1 205 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 RFX6Q8HWS3 928 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 TRIM11Q96F44 468 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 EIF3CQ99613 913 aaKnown RBP11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 ZMYM6O95789 1325 aa11.53□□□□□ -0.56
SRGAP3-207ENST00000485983 ARL4AP40617 200 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 POLR2FP61218 127 aaKnown RBP11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 PDE1BQ01064 536 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 MYL7Q01449 175 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 LMNB2Q03252 620 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 KAZNQ674X7 775 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 MCUQ8NE86 351 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 ACCSQ96QU6 501 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 CBX8Q9HC52 389 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 KIAA1024Q9UPX6 916 aa11.52□□□□□ -0.56
SRGAP3-207ENST00000485983 ARHGAP42A6NI28 874 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 PDE8BO95263 885 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 ATF2P15336 505 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 LONP1P36776 959 aaKnown RBP11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 PNOCQ13519 176 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 ERFEQ4G0M1 354 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 TTLL6Q8N841 843 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 C7orf31Q8N865 590 aa11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 DACT3Q96B18 629 aaPredicted RBP11.52□□□□□ -0.57
SRGAP3-207ENST00000485983 EFCC1Q9HA90 598 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms