RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 DCAF8L2P0C7V8 631 aa18.48■□□□□ 0.55
SRGAP3-207ENST00000485983 SUPT5HO00267 1087 aaKnown RBP17.15■□□□□ 0.34
SRGAP3-207ENST00000485983 NISCHQ9Y2I1 1504 aa16.9■□□□□ 0.3
SRGAP3-207ENST00000485983 FAM9AQ8IZU1 332 aaPredicted RBP16.86■□□□□ 0.29
SRGAP3-207ENST00000485983 EHMT2Q96KQ7 1210 aa16.79■□□□□ 0.28
SRGAP3-207ENST00000485983 APLP2Q06481 763 aa16.79■□□□□ 0.28
SRGAP3-207ENST00000485983 PELP1Q8IZL8 1130 aaKnown RBP16.77■□□□□ 0.28
SRGAP3-207ENST00000485983 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
SRGAP3-207ENST00000485983 ATP1B4Q9UN42 357 aaPredicted RBP16.21■□□□□ 0.18
SRGAP3-207ENST00000485983 TTBK1Q5TCY1 1321 aaPredicted RBP16.2■□□□□ 0.18
SRGAP3-207ENST00000485983 RANGAP1P46060 587 aaPredicted RBP16.17■□□□□ 0.18
SRGAP3-207ENST00000485983 CCER1Q8TC90 406 aaPredicted RBP16.05■□□□□ 0.16
SRGAP3-207ENST00000485983 ERICH6Q7L0X2 663 aa16.04■□□□□ 0.16
SRGAP3-207ENST00000485983 PCGF6Q9BYE7 350 aa16■□□□□ 0.15
SRGAP3-207ENST00000485983 TRIM41Q8WV44 630 aa15.91■□□□□ 0.14
SRGAP3-207ENST00000485983 UBTFP17480 764 aaKnown RBP15.9■□□□□ 0.14
SRGAP3-207ENST00000485983 CENPBP07199 599 aaPredicted RBP15.86■□□□□ 0.13
SRGAP3-207ENST00000485983 MYT1LQ9UL68 1186 aa15.85■□□□□ 0.13
SRGAP3-207ENST00000485983 ZEB1P37275 1124 aaPredicted RBP15.77■□□□□ 0.12
SRGAP3-207ENST00000485983 NEFLP07196 543 aa15.76■□□□□ 0.11
SRGAP3-207ENST00000485983 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.69■□□□□ 0.1
SRGAP3-207ENST00000485983 HNRNPUL2Q1KMD3 747 aaKnown RBP15.69■□□□□ 0.1
SRGAP3-207ENST00000485983 POLR3GLQ9BT43 218 aa15.51■□□□□ 0.07
SRGAP3-207ENST00000485983 DAXXQ9UER7 740 aaPredicted RBP15.48■□□□□ 0.07
SRGAP3-207ENST00000485983 CHIC1Q5VXU3 224 aa15.46■□□□□ 0.07
SRGAP3-207ENST00000485983 YTHDC1Q96MU7 727 aaKnown RBP15.46■□□□□ 0.06
SRGAP3-207ENST00000485983 ITGAEP38570 1179 aa15.42■□□□□ 0.06
SRGAP3-207ENST00000485983 SLC4A1APQ9BWU0 796 aaKnown RBP15.4■□□□□ 0.06
SRGAP3-207ENST00000485983 PPARGC1BQ86YN6 1023 aaKnown RBP15.35■□□□□ 0.05
SRGAP3-207ENST00000485983 CNGB1Q14028 1251 aaPredicted RBP15.27■□□□□ 0.03
SRGAP3-207ENST00000485983 CLSPNQ9HAW4 1339 aa15.14■□□□□ 0.01
SRGAP3-207ENST00000485983 TRIM26Q12899 539 aaPredicted RBP15.13■□□□□ 0.01
SRGAP3-207ENST00000485983 MYT1Q01538 1121 aa15.05■□□□□ -0
SRGAP3-207ENST00000485983 ZNF316A6NFI3 1004 aaPredicted RBP15.03■□□□□ -0
SRGAP3-207ENST00000485983 TRIM52Q96A61 297 aa15.03■□□□□ -0
SRGAP3-207ENST00000485983 FAM50AQ14320 339 aaKnown RBP15.01□□□□□ -0.01
SRGAP3-207ENST00000485983 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
SRGAP3-207ENST00000485983 FBLN2P98095 1184 aa14.98□□□□□ -0.01
SRGAP3-207ENST00000485983 PABPN1Q86U42 306 aaKnown RBP eCLIP14.97□□□□□ -0.01
SRGAP3-207ENST00000485983 BCANQ96GW7 911 aa14.97□□□□□ -0.01
SRGAP3-207ENST00000485983 SLC24A1O60721 1099 aa14.95□□□□□ -0.02
SRGAP3-207ENST00000485983 PLPPR3Q6T4P5 718 aa14.92□□□□□ -0.02
SRGAP3-207ENST00000485983 ABCC9O60706 1549 aa14.92□□□□□ -0.02
SRGAP3-207ENST00000485983 RTL5Q5HYW3 569 aaPredicted RBP14.89□□□□□ -0.03
SRGAP3-207ENST00000485983 HRCP23327 699 aa14.88□□□□□ -0.03
SRGAP3-207ENST00000485983 NEFMP07197 916 aa14.88□□□□□ -0.03
SRGAP3-207ENST00000485983 LOC105371045A0A1W2PR82 267 aa14.86□□□□□ -0.03
SRGAP3-207ENST00000485983 ZNF326Q5BKZ1 582 aaKnown RBP14.86□□□□□ -0.03
SRGAP3-207ENST00000485983 ESF1Q9H501 851 aaKnown RBP14.83□□□□□ -0.04
SRGAP3-207ENST00000485983 NEUROD1Q13562 356 aa14.81□□□□□ -0.04
SRGAP3-207ENST00000485983 CANXP27824 592 aaKnown RBP14.75□□□□□ -0.05
SRGAP3-207ENST00000485983 BCL11AQ9H165 835 aa14.73□□□□□ -0.05
SRGAP3-207ENST00000485983 ANP32CO43423 234 aa14.69□□□□□ -0.06
SRGAP3-207ENST00000485983 STAG3Q9UJ98 1225 aa14.66□□□□□ -0.06
SRGAP3-207ENST00000485983 DIEXFQ68CQ4 756 aaKnown RBP14.66□□□□□ -0.06
SRGAP3-207ENST00000485983 NPM1P06748 294 aaKnown RBP eCLIP14.65□□□□□ -0.06
SRGAP3-207ENST00000485983 CDK11AQ9UQ88 783 aaPredicted RBP14.63□□□□□ -0.07
SRGAP3-207ENST00000485983 ZNF777Q9ULD5 760 aaPredicted RBP14.62□□□□□ -0.07
SRGAP3-207ENST00000485983 ARID3CA6NKF2 412 aa14.62□□□□□ -0.07
SRGAP3-207ENST00000485983 CHGAP10645 457 aaKnown RBP14.57□□□□□ -0.08
SRGAP3-207ENST00000485983 P3H3Q8IVL6 736 aa14.56□□□□□ -0.08
SRGAP3-207ENST00000485983 SCAF1Q9H7N4 1312 aaKnown RBP14.4□□□□□ -0.1
SRGAP3-207ENST00000485983 NPM2Q86SE8 214 aaKnown RBP14.39□□□□□ -0.11
SRGAP3-207ENST00000485983 HSP90AA1P07900 732 aaKnown RBP14.38□□□□□ -0.11
SRGAP3-207ENST00000485983 A0A0G2JS52 829 aa14.37□□□□□ -0.11
SRGAP3-207ENST00000485983 ANP32BQ92688 251 aaKnown RBP14.35□□□□□ -0.11
SRGAP3-207ENST00000485983 CSRNP3Q8WYN3 585 aa14.35□□□□□ -0.11
SRGAP3-207ENST00000485983 ANP32AP39687 249 aaKnown RBP14.34□□□□□ -0.11
SRGAP3-207ENST00000485983 UPF2Q9HAU5 1272 aaKnown RBP14.32□□□□□ -0.12
SRGAP3-207ENST00000485983 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.3□□□□□ -0.12
SRGAP3-207ENST00000485983 PLEKHG5O94827 1062 aa14.28□□□□□ -0.12
SRGAP3-207ENST00000485983 TONSLQ96HA7 1378 aa14.27□□□□□ -0.13
SRGAP3-207ENST00000485983 TSPY4P0CV99 314 aa14.26□□□□□ -0.13
SRGAP3-207ENST00000485983 TSPY10P0CW01 314 aa14.26□□□□□ -0.13
SRGAP3-207ENST00000485983 C14orf37Q86TY3 774 aa14.24□□□□□ -0.13
SRGAP3-207ENST00000485983 CDK11BP21127 795 aaKnown RBP14.24□□□□□ -0.13
SRGAP3-207ENST00000485983 SENP3Q9H4L4 574 aaPredicted RBP14.24□□□□□ -0.13
SRGAP3-207ENST00000485983 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.21□□□□□ -0.13
SRGAP3-207ENST00000485983 ZBTB7CA1YPR0 619 aa14.21□□□□□ -0.13
SRGAP3-207ENST00000485983 PPP1R15AO75807 674 aaPredicted RBP14.21□□□□□ -0.13
SRGAP3-207ENST00000485983 GTF3C3Q9Y5Q9 886 aa14.21□□□□□ -0.13
SRGAP3-207ENST00000485983 HAP1P54257 671 aaPredicted RBP14.21□□□□□ -0.14
SRGAP3-207ENST00000485983 TRHP20396 242 aaPredicted RBP14.2□□□□□ -0.14
SRGAP3-207ENST00000485983 CHMP7Q8WUX9 453 aaPredicted RBP14.2□□□□□ -0.14
SRGAP3-207ENST00000485983 WDR43Q15061 677 aaKnown RBP eCLIP14.19□□□□□ -0.14
SRGAP3-207ENST00000485983 TMC1Q8TDI8 760 aa14.16□□□□□ -0.14
SRGAP3-207ENST00000485983 SALL2Q9Y467 1007 aaPredicted RBP14.16□□□□□ -0.14
SRGAP3-207ENST00000485983 CHIC2Q9UKJ5 165 aa14.16□□□□□ -0.14
SRGAP3-207ENST00000485983 SCRIBQ14160 1630 aa14.15□□□□□ -0.14
SRGAP3-207ENST00000485983 MYH16Q9H6N6 1097 aa14.15□□□□□ -0.14
SRGAP3-207ENST00000485983 FAM9BQ8IZU0 186 aa14.14□□□□□ -0.15
SRGAP3-207ENST00000485983 KDM2AQ9Y2K7 1162 aa14.13□□□□□ -0.15
SRGAP3-207ENST00000485983 ARID4BQ4LE39 1312 aaPredicted RBP14.13□□□□□ -0.15
SRGAP3-207ENST00000485983 HNRNPUQ00839 825 aaKnown RBP eCLIP14.12□□□□□ -0.15
SRGAP3-207ENST00000485983 KCNH8Q96L42 1107 aa14.07□□□□□ -0.16
SRGAP3-207ENST00000485983 ARXQ96QS3 562 aa14.07□□□□□ -0.16
SRGAP3-207ENST00000485983 DDX10Q13206 875 aaKnown RBP14.04□□□□□ -0.16
SRGAP3-207ENST00000485983 MTUS2Q5JR59 1369 aa14.04□□□□□ -0.16
SRGAP3-207ENST00000485983 CCDC136Q96JN2 1154 aa14.03□□□□□ -0.16
SRGAP3-207ENST00000485983 FKBP8Q14318 412 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms