RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 EDNRBP24530 442 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 CALML3P27482 149 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 IRX5P78411 483 aaPredicted RBP14.05□□□□□ -0.16
USP40-210ENST00000454354 QRICH1Q2TAL8 776 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 IQSEC1Q6DN90 963 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 ANKRD33Q7Z3H0 272 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 RALYLQ86SE5 291 aaKnown RBP14.05□□□□□ -0.16
USP40-210ENST00000454354 TLK2Q86UE8 772 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 MB21D2Q8IYB1 491 aaPredicted RBP14.05□□□□□ -0.16
USP40-210ENST00000454354 STAG2Q8N3U4 1231 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 MTMR8Q96EF0 704 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 ESYT1Q9BSJ8 1104 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 PDGFCQ9NRA1 345 aa14.05□□□□□ -0.16
USP40-210ENST00000454354 RBM47A0AV96 593 aaKnown RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 TRIM43BA6NCK2 446 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 IFIT3O14879 490 aaKnown RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 CLTBP09497 229 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 ANTXR2P58335 489 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 GRM4Q14833 912 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 SART3Q15020 963 aaKnown RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 GNASQ5JWF2 1037 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 SH3RF1Q7Z6J0 888 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 FBXO11Q86XK2 927 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 TRIM43Q96BQ3 446 aaPredicted RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 GLT1D1Q96MS3 346 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 MPHOSPH6Q99547 160 aaKnown RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 LBHD1Q9BQE6 289 aaPredicted RBP14.04□□□□□ -0.16
USP40-210ENST00000454354 MTA3Q9BTC8 594 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 MROH7Q68CQ1 1323 aa14.04□□□□□ -0.16
USP40-210ENST00000454354 A0A0U1RQG5 324 aaPredicted RBP14.03□□□□□ -0.16
USP40-210ENST00000454354 ERICH2A1L162 156 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 KLRF2D3W0D1 207 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 KIAA0355O15063 1070 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 PQBP1O60828 265 aaKnown RBP14.03□□□□□ -0.16
USP40-210ENST00000454354 CDK7P50613 346 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 GHRHRQ02643 423 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 TROAPQ12815 778 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 WTAPQ15007 396 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 FSCN1Q16658 493 aaKnown RBP14.03□□□□□ -0.16
USP40-210ENST00000454354 DUSP28Q4G0W2 176 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 GPR153Q6NV75 609 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 KIAA1211Q6ZU35 1233 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 EEPD1Q7L9B9 569 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 SENP2Q9HC62 589 aa14.03□□□□□ -0.16
USP40-210ENST00000454354 PRDM5Q9NQX1 630 aaPredicted RBP14.03□□□□□ -0.16
USP40-210ENST00000454354 B4DLN1 442 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 DHX16O60231 1041 aaKnown RBP14.02□□□□□ -0.17
USP40-210ENST00000454354 CABYRO75952 493 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 MRPL12P52815 198 aaKnown RBP14.02□□□□□ -0.17
USP40-210ENST00000454354 BEX3Q00994 111 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 PDE4DQ08499 809 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 SLC35G1Q2M3R5 365 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 NOL8Q76FK4 1167 aaKnown RBP14.02□□□□□ -0.17
USP40-210ENST00000454354 SKAP1Q86WV1 359 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 MCF2L2Q86YR7 1114 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 SLC43A3Q8NBI5 491 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 SYTL5Q8TDW5 730 aaPredicted RBP14.02□□□□□ -0.17
USP40-210ENST00000454354 IGDCC4Q8TDY8 1250 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 LRCH3Q96II8 777 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 AMNQ9BXJ7 453 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 AP5M1Q9H0R1 490 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 RIOX1Q9H6W3 641 aa14.02□□□□□ -0.17
USP40-210ENST00000454354 MRPL11Q9Y3B7 192 aaKnown RBP14.02□□□□□ -0.17
USP40-210ENST00000454354 DCDC2CA8MYV0 355 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 ARVCFO00192 962 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 OPLAHO14841 1288 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 SLC27A2O14975 620 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 ZBTB5O15062 677 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 DYNC1LI2O43237 492 aaPredicted RBP14.01□□□□□ -0.17
USP40-210ENST00000454354 PPP1R11O60927 126 aaPredicted RBP14.01□□□□□ -0.17
USP40-210ENST00000454354 PTGS1P23219 599 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 FAAP100Q0VG06 881 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 NECTIN1Q15223 517 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 TMEM67Q5HYA8 995 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 TMEM63BQ5T3F8 832 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 CHST3Q7LGC8 479 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 SCFD2Q8WU76 684 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 TBC1D5Q92609 795 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 BADQ92934 168 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 MAP3K14Q99558 947 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 SEZ6LQ9BYH1 1024 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 WDR11Q9BZH6 1224 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 VAT1LQ9HCJ6 419 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 COL20A1Q9P218 1284 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 TBX21Q9UL17 535 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 TANC1Q9C0D5 1861 aa14.01□□□□□ -0.17
USP40-210ENST00000454354 NKRFO15226 690 aaKnown RBP eCLIP14□□□□□ -0.17
USP40-210ENST00000454354 ZEB2O60315 1214 aa14□□□□□ -0.17
USP40-210ENST00000454354 ITGB8P26012 769 aa14□□□□□ -0.17
USP40-210ENST00000454354 HSD17B4P51659 736 aa14□□□□□ -0.17
USP40-210ENST00000454354 CREB3L3Q68CJ9 461 aa14□□□□□ -0.17
USP40-210ENST00000454354 CATIPQ7Z7H3 387 aa14□□□□□ -0.17
USP40-210ENST00000454354 FAM126BQ8IXS8 530 aa14□□□□□ -0.17
USP40-210ENST00000454354 SAMD3Q8N6K7 520 aa14□□□□□ -0.17
USP40-210ENST00000454354 NSUN6Q8TEA1 469 aaKnown RBP14□□□□□ -0.17
USP40-210ENST00000454354 LY9Q9HBG7 655 aa14□□□□□ -0.17
USP40-210ENST00000454354 ANO2Q9NQ90 1003 aa14□□□□□ -0.17
USP40-210ENST00000454354 MAP3K20Q9NYL2 800 aaKnown RBP14□□□□□ -0.17
USP40-210ENST00000454354 COL6A3P12111 3177 aa13.99□□□□□ -0.17
USP40-210ENST00000454354 SH2B2O14492 632 aaPredicted RBP13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms