RNA–Protein interactions for RNA: YER098W

UBP9, Transcript of Ubiquitin-specific protease that cleaves ubiquitin-protein fusions, yeast

Gene UBP9, Length 2,265 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP9	YER098W	FUS2	Q05670	677 aa		5.21	□□□□□ -1.58
UBP9	YER098W	RGC1	Q06108	1083 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	MDM20	Q12387	796 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	NBL1	Q3E7Y6	73 aa		5.21	□□□□□ -1.58
UBP9	YER098W	CMD1	P06787	147 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	ILS1	P09436	1072 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	URA4	P20051	364 aa		5.21	□□□□□ -1.58
UBP9	YER098W	ERG8	P24521	451 aa		5.21	□□□□□ -1.58
UBP9	YER098W	YBL029W	P38201	376 aa		5.21	□□□□□ -1.58
UBP9	YER098W	UTP9	P38882	575 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	DSE1	P40077	573 aa		5.21	□□□□□ -1.58
UBP9	YER098W	LTP1	P40347	161 aa		5.21	□□□□□ -1.58
UBP9	YER098W	TMA20	P89886	181 aa	Predicted RBP	5.21	□□□□□ -1.58
UBP9	YER098W	YPL108W	Q02872	168 aa	Predicted RBP	5.21	□□□□□ -1.58
UBP9	YER098W	FDC1	Q03034	503 aa		5.21	□□□□□ -1.58
UBP9	YER098W	PRP42	Q03776	544 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	CTK1	Q03957	528 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	HOF1	Q05080	669 aa		5.21	□□□□□ -1.58
UBP9	YER098W	RIX7	Q07844	837 aa	Known RBP	5.21	□□□□□ -1.58
UBP9	YER098W	NTO1	Q12311	748 aa		5.21	□□□□□ -1.58
UBP9	YER098W	PEX1	P24004	1043 aa		5.2	□□□□□ -1.58
UBP9	YER098W	DCG1	P32460	244 aa		5.2	□□□□□ -1.58
UBP9	YER098W	GDA1	P32621	518 aa		5.2	□□□□□ -1.58
UBP9	YER098W	RPC34	P32910	317 aa		5.2	□□□□□ -1.58
UBP9	YER098W	VPS21	P36017	210 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	RCN1	P36054	211 aa		5.2	□□□□□ -1.58
UBP9	YER098W	TRM5	P38793	499 aa		5.2	□□□□□ -1.58
UBP9	YER098W	MET18	P40469	1032 aa		5.2	□□□□□ -1.58
UBP9	YER098W	MKT1	P40850	830 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	COS12	P53053	380 aa		5.2	□□□□□ -1.58
UBP9	YER098W	PRP43	P53131	767 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	YNL058C	P53947	316 aa		5.2	□□□□□ -1.58
UBP9	YER098W	YDR131C	Q03899	556 aa		5.2	□□□□□ -1.58
UBP9	YER098W	SMC5	Q08204	1093 aa		5.2	□□□□□ -1.58
UBP9	YER098W	NMD4	Q12129	218 aa		5.2	□□□□□ -1.58
UBP9	YER098W	APC2	Q12440	853 aa		5.2	□□□□□ -1.58
UBP9	YER098W	YPT6	Q99260	215 aa		5.2	□□□□□ -1.58
UBP9	YER098W	LCB1	P25045	558 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	YCR016W	P25617	290 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	SMY1	P32364	656 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	HCS1	P34243	683 aa		5.2	□□□□□ -1.58
UBP9	YER098W	KDX1	P36005	433 aa		5.2	□□□□□ -1.58
UBP9	YER098W	ALY1	P36117	915 aa		5.2	□□□□□ -1.58
UBP9	YER098W	SRO77	P38163	1010 aa		5.2	□□□□□ -1.58
UBP9	YER098W	FCY21	P40039	528 aa		5.2	□□□□□ -1.58
UBP9	YER098W	YJL068C	P40363	299 aa		5.2	□□□□□ -1.58
UBP9	YER098W	SWP82	P43554	623 aa		5.2	□□□□□ -1.58
UBP9	YER098W	YGR054W	P53235	642 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	DML1	Q03652	475 aa		5.2	□□□□□ -1.58
UBP9	YER098W	YFT2	Q06676	274 aa		5.2	□□□□□ -1.58
UBP9	YER098W	MLH2	Q07980	695 aa		5.2	□□□□□ -1.58
UBP9	YER098W	RCN2	Q12044	265 aa		5.2	□□□□□ -1.58
UBP9	YER098W	ISA2	Q12425	185 aa		5.2	□□□□□ -1.58
UBP9	YER098W	PNO1	Q99216	274 aa	Known RBP	5.2	□□□□□ -1.58
UBP9	YER098W	VCX1	Q99385	411 aa		5.2	□□□□□ -1.58
UBP9	YER098W	VPS33	P20795	691 aa		5.19	□□□□□ -1.58
UBP9	YER098W	PRE8	P23639	250 aa		5.19	□□□□□ -1.58
UBP9	YER098W	OCA4	P25366	362 aa		5.19	□□□□□ -1.58
UBP9	YER098W	FEN2	P25621	512 aa	Known RBP	5.19	□□□□□ -1.58
UBP9	YER098W	HXT3	P32466	567 aa	Known RBP	5.19	□□□□□ -1.58
UBP9	YER098W	PPS1	P38148	807 aa		5.19	□□□□□ -1.58
UBP9	YER098W	DIA4	P38705	446 aa	Predicted RBP	5.19	□□□□□ -1.58
UBP9	YER098W	FLC2	P39719	783 aa		5.19	□□□□□ -1.58
UBP9	YER098W	TMN3	P40071	706 aa		5.19	□□□□□ -1.58
UBP9	YER098W	UTP6	Q02354	440 aa	Known RBP	5.19	□□□□□ -1.58
UBP9	YER098W	YDR476C	Q03362	224 aa		5.19	□□□□□ -1.58
UBP9	YER098W	YDR286C	Q05530	114 aa		5.19	□□□□□ -1.58
UBP9	YER098W	SEC10	Q06245	871 aa		5.19	□□□□□ -1.58
UBP9	YER098W	MCA1	Q08601	432 aa		5.19	□□□□□ -1.58
UBP9	YER098W	TAF3	Q12297	353 aa		5.19	□□□□□ -1.58
UBP9	YER098W	CYC7	P00045	113 aa		5.18	□□□□□ -1.58
UBP9	YER098W	CBS1	P14066	229 aa		5.18	□□□□□ -1.58
UBP9	YER098W	OM45	P16547	393 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YCR015C	P25616	317 aa		5.18	□□□□□ -1.58
UBP9	YER098W	BMH2	P34730	273 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	PDX3	P38075	228 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	YHB1	P39676	399 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	BNA3	P47039	444 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	ORC3	P54790	616 aa		5.18	□□□□□ -1.58
UBP9	YER098W	SWP1	Q02795	286 aa		5.18	□□□□□ -1.58
UBP9	YER098W	RMT2	Q03305	412 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YAP6	Q03935	383 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YDR278C	Q05612	105 aa		5.18	□□□□□ -1.58
UBP9	YER098W	ARR3	Q06598	404 aa		5.18	□□□□□ -1.58
UBP9	YER098W	PDE2	P06776	526 aa		5.18	□□□□□ -1.58
UBP9	YER098W	TUB1	P09733	447 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	CAD1	P24813	409 aa	Known RBP	5.18	□□□□□ -1.58
UBP9	YER098W	CLB3	P24870	427 aa		5.18	□□□□□ -1.58
UBP9	YER098W	NIP100	P33420	868 aa		5.18	□□□□□ -1.58
UBP9	YER098W	KAE1	P36132	386 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YJL193W	P39542	402 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YTA12	P40341	825 aa		5.18	□□□□□ -1.58
UBP9	YER098W	LRO1	P40345	661 aa		5.18	□□□□□ -1.58
UBP9	YER098W	SNL1	P40548	159 aa		5.18	□□□□□ -1.58
UBP9	YER098W	GCD10	P41814	478 aa		5.18	□□□□□ -1.58
UBP9	YER098W	SKP2	P42843	763 aa		5.18	□□□□□ -1.58
UBP9	YER098W	IDS2	P46958	469 aa		5.18	□□□□□ -1.58
UBP9	YER098W	TAF6	P53040	516 aa		5.18	□□□□□ -1.58
UBP9	YER098W	NSG2	P53898	299 aa		5.18	□□□□□ -1.58
UBP9	YER098W	YMR187C	Q03236	431 aa		5.18	□□□□□ -1.58

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms