RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeastyeast

Gene RUB1, Length 234 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RUB1YDR139C OLE1P21147 510 aaKnown RBP3.62□□□□□ -1.83
RUB1YDR139C SGF29P25554 259 aa3.62□□□□□ -1.83
RUB1YDR139C ACH1P32316 526 aa3.62□□□□□ -1.83
RUB1YDR139C SEF1P34228 1148 aa3.62□□□□□ -1.83
RUB1YDR139C YKL023WP36103 277 aaKnown RBP3.62□□□□□ -1.83
RUB1YDR139C YER130CP39959 443 aa3.62□□□□□ -1.83
RUB1YDR139C ALG5P40350 334 aa3.62□□□□□ -1.83
RUB1YDR139C YJL070CP40361 888 aa3.62□□□□□ -1.83
RUB1YDR139C DIM1P41819 318 aaKnown RBP3.62□□□□□ -1.83
RUB1YDR139C YGR126WP53274 230 aa3.62□□□□□ -1.83
RUB1YDR139C YPL014WQ02606 381 aa3.62□□□□□ -1.83
RUB1YDR139C SHR3Q02774 210 aa3.62□□□□□ -1.83
RUB1YDR139C YMR317WQ04893 1140 aa3.62□□□□□ -1.83
RUB1YDR139C DIC1Q06143 298 aa3.62□□□□□ -1.83
RUB1YDR139C YJR112W-AQ3E743 109 aa3.62□□□□□ -1.83
RUB1YDR139C GCN4P03069 281 aa3.61□□□□□ -1.83
RUB1YDR139C PEP5P12868 1029 aa3.61□□□□□ -1.83
RUB1YDR139C ART10P18634 518 aaKnown RBP3.61□□□□□ -1.83
RUB1YDR139C RPS2P25443 254 aaKnown RBP3.61□□□□□ -1.83
RUB1YDR139C PEP3P27801 918 aa3.61□□□□□ -1.83
RUB1YDR139C VPS17P32913 551 aa3.61□□□□□ -1.83
RUB1YDR139C YNK1P36010 153 aaKnown RBP3.61□□□□□ -1.83
RUB1YDR139C REG2P38232 338 aa3.61□□□□□ -1.83
RUB1YDR139C YTA12P40341 825 aa3.61□□□□□ -1.83
RUB1YDR139C YJL068CP40363 299 aa3.61□□□□□ -1.83
RUB1YDR139C MAF1P41910 395 aa3.61□□□□□ -1.83
RUB1YDR139C MRX6P48564 524 aa3.61□□□□□ -1.83
RUB1YDR139C HOS2P53096 452 aaPredicted RBP3.61□□□□□ -1.83
RUB1YDR139C YGR066CP53242 292 aa3.61□□□□□ -1.83
RUB1YDR139C IPI3P53877 555 aa3.61□□□□□ -1.83
RUB1YDR139C SAM50P53969 484 aa3.61□□□□□ -1.83
RUB1YDR139C RHO4Q00246 291 aa3.61□□□□□ -1.83
RUB1YDR139C PDH1Q12428 516 aaKnown RBP3.61□□□□□ -1.83
RUB1YDR139C MRP13P12686 339 aa3.6□□□□□ -1.83
RUB1YDR139C CBS1P14066 229 aa3.6□□□□□ -1.83
RUB1YDR139C TIF3P34167 436 aaKnown RBP3.6□□□□□ -1.83
RUB1YDR139C ALT2P52892 507 aa3.6□□□□□ -1.83
RUB1YDR139C YGL260WP53056 76 aa3.6□□□□□ -1.83
RUB1YDR139C CRZ1P53968 678 aa3.6□□□□□ -1.83
RUB1YDR139C GLO2Q05584 274 aa3.6□□□□□ -1.83
RUB1YDR139C IMH1Q06704 911 aaKnown RBP3.6□□□□□ -1.83
RUB1YDR139C YDL057WQ07379 328 aa3.6□□□□□ -1.83
RUB1YDR139C THI20Q08224 551 aa3.6□□□□□ -1.83
RUB1YDR139C DAP1Q12091 152 aa3.6□□□□□ -1.83
RUB1YDR139C RRI2Q12348 645 aa3.6□□□□□ -1.83
RUB1YDR139C PMS1P14242 873 aa3.59□□□□□ -1.83
RUB1YDR139C SEC62P21825 274 aa3.59□□□□□ -1.83
RUB1YDR139C ECM15P35195 104 aa3.59□□□□□ -1.83
RUB1YDR139C TCD2P36101 447 aaKnown RBP3.59□□□□□ -1.83
RUB1YDR139C YHR210CP38893 341 aa3.59□□□□□ -1.83
RUB1YDR139C IMD4P50094 524 aaKnown RBP3.59□□□□□ -1.83
RUB1YDR139C VPS75P53853 264 aa3.59□□□□□ -1.83
RUB1YDR139C FIN1Q03898 291 aa3.59□□□□□ -1.83
RUB1YDR139C RBA50Q04418 439 aa3.59□□□□□ -1.83
RUB1YDR139C TIP41Q12199 356 aa3.59□□□□□ -1.83
RUB1YDR139C YML002WP0CF17 737 aa3.58□□□□□ -1.84
RUB1YDR139C PDA1P16387 420 aaKnown RBP3.58□□□□□ -1.84
RUB1YDR139C YBR225WP38321 900 aa3.58□□□□□ -1.84
RUB1YDR139C RMD8P43620 662 aa3.58□□□□□ -1.84
RUB1YDR139C ALK1P43633 760 aaKnown RBP3.58□□□□□ -1.84
RUB1YDR139C RBG2P53295 368 aaKnown RBP3.58□□□□□ -1.84
RUB1YDR139C BUD32P53323 261 aa3.58□□□□□ -1.84
RUB1YDR139C TOF2Q02208 771 aa3.58□□□□□ -1.84
RUB1YDR139C VPS38Q05919 439 aa3.58□□□□□ -1.84
RUB1YDR139C NCE102Q12207 173 aaRIP-Chip data3.58□□□□□ -1.84not detected
RUB1YDR139C MED1Q12321 566 aa3.58□□□□□ -1.84
RUB1YDR139C AVL9Q12500 764 aa3.58□□□□□ -1.84
RUB1YDR139C DFR1P07807 211 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
RUB1YDR139C MET8P15807 274 aa3.57□□□□□ -1.84
RUB1YDR139C OCA4P25366 362 aa3.57□□□□□ -1.84
RUB1YDR139C PAP1P29468 568 aaKnown RBP3.57□□□□□ -1.84
RUB1YDR139C FMP46P36141 133 aaKnown RBP3.57□□□□□ -1.84
RUB1YDR139C MSR1P38714 643 aa3.57□□□□□ -1.84
RUB1YDR139C CSM2P40465 213 aa3.57□□□□□ -1.84
RUB1YDR139C SGN1P40561 250 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
RUB1YDR139C IKS1P47042 667 aa3.57□□□□□ -1.84
RUB1YDR139C YJR154WP47181 346 aa3.57□□□□□ -1.84
RUB1YDR139C YOR365CQ08844 703 aa3.57□□□□□ -1.84
RUB1YDR139C RLM1Q12224 676 aa3.57□□□□□ -1.84
RUB1YDR139C HSH49Q99181 213 aaPredicted RBP3.57□□□□□ -1.84
RUB1YDR139C GAL80P04387 435 aa3.56□□□□□ -1.84
RUB1YDR139C PEP4P07267 405 aaKnown RBP3.56□□□□□ -1.84
RUB1YDR139C SGV1P23293 657 aaKnown RBP3.56□□□□□ -1.84
RUB1YDR139C SHP1P34223 423 aa3.56□□□□□ -1.84
RUB1YDR139C SRO77P38163 1010 aa3.56□□□□□ -1.84
RUB1YDR139C ARE2P53629 642 aaKnown RBP3.56□□□□□ -1.84
RUB1YDR139C RPT6Q01939 405 aaKnown RBP3.56□□□□□ -1.84
RUB1YDR139C YMR087WQ04299 284 aa3.56□□□□□ -1.84
RUB1YDR139C MFB1Q04922 465 aa3.56□□□□□ -1.84
RUB1YDR139C COQ9Q05779 260 aa3.56□□□□□ -1.84
RUB1YDR139C THP1Q08231 455 aa3.56□□□□□ -1.84
RUB1YDR139C CAR1P00812 333 aaKnown RBP3.55□□□□□ -1.84
RUB1YDR139C RAD52P06778 471 aaKnown RBP3.55□□□□□ -1.84
RUB1YDR139C PHO2P07269 559 aa3.55□□□□□ -1.84
RUB1YDR139C APE1P14904 514 aa3.55□□□□□ -1.84
RUB1YDR139C HSC82P15108 705 aaKnown RBP3.55□□□□□ -1.84
RUB1YDR139C PRD1P25375 712 aa3.55□□□□□ -1.84
RUB1YDR139C PRO3P32263 286 aaKnown RBP3.55□□□□□ -1.84
RUB1YDR139C YME1P32795 747 aa3.55□□□□□ -1.84
RUB1YDR139C SWE1P32944 819 aa3.55□□□□□ -1.84
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms