RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 ZBTB12Q9Y330 459 aaPredicted RBP17.68■□□□□ 0.42
CLN3-251ENST00000636853 COL4A5P29400 1685 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 EDIL3O43854 480 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 TECP42680 631 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 RRP1BQ14684 758 aaKnown RBP17.68■□□□□ 0.42
CLN3-251ENST00000636853 TMEM179Q6ZVK1 233 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 CSRNP1Q96S65 589 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 RIC8AQ9NPQ8 531 aa17.68■□□□□ 0.42
CLN3-251ENST00000636853 PSME4Q14997 1843 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 LRRC15Q8TF66 581 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 MTMR8Q96EF0 704 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 PSMD1Q99460 953 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 ATRNL1Q5VV63 1379 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 SYNRGQ9UMZ2 1314 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 COBLO75128 1261 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 TDP2O95551 362 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 TNNI2P48788 182 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 CABP7Q86V35 215 aa17.67■□□□□ 0.42
CLN3-251ENST00000636853 SMAP1Q8IYB5 467 aaPredicted RBP17.67■□□□□ 0.42
CLN3-251ENST00000636853 SPDYE2BA6NHP3 402 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 GH2P01242 217 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 RPN1P04843 607 aaKnown RBP17.66■□□□□ 0.42
CLN3-251ENST00000636853 SPDYE6P0CI01 402 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 TXKP42681 527 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 PPP1R18Q6NYC8 613 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 VSTM4Q8IW00 320 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 CCDC150Q8NCX0 1101 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 DCAF4Q8WV16 495 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 NUP88Q99567 741 aaPredicted RBP17.66■□□□□ 0.42
CLN3-251ENST00000636853 CTNND2Q9UQB3 1225 aa17.66■□□□□ 0.42
CLN3-251ENST00000636853 F5H6K3 240 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 SLC37A4O43826 429 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 VIL1P09327 827 aaKnown RBP17.65■□□□□ 0.42
CLN3-251ENST00000636853 SFPQP23246 707 aaKnown RBP eCLIP17.65■□□□□ 0.42
CLN3-251ENST00000636853 KLRC3Q07444 240 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 QRICH1Q2TAL8 776 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 GRIPAP1Q4V328 841 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 CT47A1Q5JQC4 288 aaPredicted RBP17.65■□□□□ 0.42
CLN3-251ENST00000636853 SPATA1Q5VX52 437 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 CUL5Q93034 780 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 AK8Q96MA6 479 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 C16orf45Q96MC5 204 aaPredicted RBP17.65■□□□□ 0.42
CLN3-251ENST00000636853 USP27XA6NNY8 438 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 RBM26Q5T8P6 1007 aaKnown RBP17.65■□□□□ 0.42
CLN3-251ENST00000636853 GMLQ99445 158 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 TMOD2Q9NZR1 351 aa17.65■□□□□ 0.42
CLN3-251ENST00000636853 PLCG1P19174 1290 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 CLK2P49760 499 aaKnown RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 SNAP25P60880 206 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 DLGAP5Q15398 846 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 CALCRLQ16602 461 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 TPD52L1Q16890 204 aaPredicted RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 MTMR9Q96QG7 549 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 PSTPIP2Q9H939 334 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 MAPK8IP1Q9UQF2 711 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 GDAQ9Y2T3 454 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 NDUFB10O96000 172 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 MRPL12P52815 198 aaKnown RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 GOLGA8FQ08AF8 430 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 GOLGA8DPQ0D2H9 430 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 CDC37Q16543 378 aaPredicted RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 ZNF658Q5TYW1 1059 aaPredicted RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 OGFOD1Q8N543 542 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.64■□□□□ 0.41
CLN3-251ENST00000636853 ZNF70Q9UC06 446 aaPredicted RBP17.64■□□□□ 0.41
CLN3-251ENST00000636853 HDAC9Q9UKV0 1011 aa17.64■□□□□ 0.41
CLN3-251ENST00000636853 RBM10P98175 930 aaKnown RBP17.63■□□□□ 0.41
CLN3-251ENST00000636853 ORC2Q13416 577 aaPredicted RBP17.63■□□□□ 0.41
CLN3-251ENST00000636853 MMTAG2Q9BU76 263 aaKnown RBP17.63■□□□□ 0.41
CLN3-251ENST00000636853 KBTBD4Q9NVX7 518 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 RMND1Q9NWS8 449 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 TRMT1Q9NXH9 659 aaKnown RBP17.63■□□□□ 0.41
CLN3-251ENST00000636853 PRDM4Q9UKN5 801 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 IGSF22Q8N9C0 903 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 SLC16A10Q8TF71 515 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 PRIMPOLQ96LW4 560 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 PCDHA1Q9Y5I3 950 aa17.63■□□□□ 0.41
CLN3-251ENST00000636853 MYH7BA7E2Y1 1941 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 ARFGEF1Q9Y6D6 1849 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 A0A1W2PRG0 241 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L15C9J2P7 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L13C9JLJ4 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L11C9JVI0 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L18D6R9N7 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L22D6RA61 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L17D6RBQ6 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L19D6RCP7 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L20D6RJB6 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L24Q0WX57 530 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 USP17L6PQ6QN14 398 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 VEZTQ9HBM0 779 aa17.62■□□□□ 0.41
CLN3-251ENST00000636853 ZBTB7AO95365 584 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 PRCPP42785 496 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 IKQ13123 557 aaPredicted RBP17.61■□□□□ 0.41
CLN3-251ENST00000636853 KMT5BQ4FZB7 885 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 APTXQ7Z2E3 356 aaKnown RBP17.61■□□□□ 0.41
CLN3-251ENST00000636853 GMCL1P1Q8NEA9 526 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 COL2A1P02458 1487 aaPredicted RBP17.61■□□□□ 0.41
CLN3-251ENST00000636853 KLRC4O43908 158 aa17.61■□□□□ 0.41
CLN3-251ENST00000636853 PAK1Q13153 545 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms