RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SORBS3O60504 671 aa17.72■□□□□ 0.43
CPSF1-213ENST00000620219 STXBP3O00186 592 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 TRAPPC10P48553 1259 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 GJA10Q969M2 543 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 PAGR1Q9BTK6 254 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 MKRN1Q9UHC7 482 aaKnown RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 PPP1R12BO60237 982 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 DDNO94850 711 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 TDP2O95551 362 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 VIL1P09327 827 aaKnown RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 EPS15P42566 896 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 CYP4A11Q02928 519 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 ENGASEQ8NFI3 743 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 AP5Z1O43299 807 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 CBFA2T2O43439 604 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 ZNF75DP51815 510 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 MYL5Q02045 173 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 PAXIP1Q6ZW49 1069 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 FAM177A1Q8N128 213 aaPredicted RBP17.71■□□□□ 0.43
CPSF1-213ENST00000620219 TBC1D7Q9P0N9 293 aa17.71■□□□□ 0.43
CPSF1-213ENST00000620219 RESP18Q5W5W9 173 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 TYW1BQ6NUM6 668 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 DDX60Q8IY21 1712 aaKnown RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 ZBED4O75132 1171 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 PRKCSHP14314 528 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 ERMNQ8TAM6 284 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 DCAF4Q8WV16 495 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 FUCA2Q9BTY2 467 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 NT5C2P49902 561 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 MKRN3Q13064 507 aaKnown RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 PPFIBP1Q86W92 1011 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 IDI2Q9BXS1 227 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 SH3GLB2Q9NR46 395 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 NYAP2Q9P242 653 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 CTNND2Q9UQB3 1225 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 PDE4DQ08499 809 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 PTPAQ15257 358 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 NBPF12Q5TAG4 269 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 ZKSCAN4Q969J2 545 aaPredicted RBP17.7■□□□□ 0.42
CPSF1-213ENST00000620219 NFE2L3Q9Y4A8 694 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 WNK3Q9BYP7 1800 aa17.7■□□□□ 0.42
CPSF1-213ENST00000620219 GCOM1H8Y6P7 765 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-213ENST00000620219 POLR2MP0CAP2 368 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 GADL1Q6ZQY3 521 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 SV2BQ7L1I2 683 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 POTEDQ86YR6 584 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 C16orf45Q96MC5 204 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-213ENST00000620219 SFPQP23246 707 aaKnown RBP eCLIP17.69■□□□□ 0.42
CPSF1-213ENST00000620219 HOOK2Q96ED9 719 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 FBXO2Q9UK22 296 aaPredicted RBP17.69■□□□□ 0.42
CPSF1-213ENST00000620219 CD2APQ9Y5K6 639 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 SRCAPQ6ZRS2 3230 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 POTEMA6NI47 508 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 PRR29P0C7W0 189 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 GLT8D2Q9H1C3 349 aa17.69■□□□□ 0.42
CPSF1-213ENST00000620219 FGRP09769 529 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 INPP5BP32019 993 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 MAEAQ7L5Y9 396 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 PDLIM2Q96JY6 352 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 RMND1Q9NWS8 449 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 WNT7AO00755 349 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 LAMA4Q16363 1823 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 N4BP3O15049 544 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 SUPT20HL1Q3ZLR7 823 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 MAP3K14Q99558 947 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 ANO3Q9BYT9 981 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 RAVER2Q9HCJ3 691 aaKnown RBP17.68■□□□□ 0.42
CPSF1-213ENST00000620219 ATP1A3P13637 1013 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 MTMR2Q13614 643 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 TMEM60Q9H2L4 133 aa17.68■□□□□ 0.42
CPSF1-213ENST00000620219 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.68■□□□□ 0.42
CPSF1-213ENST00000620219 SPDYE2Q495Y8 402 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 SH3BP5LQ7L8J4 393 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 AS3MTQ9HBK9 375 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 MRPL11Q9Y3B7 192 aaKnown RBP17.67■□□□□ 0.42
CPSF1-213ENST00000620219 LONP1P36776 959 aaKnown RBP17.67■□□□□ 0.42
CPSF1-213ENST00000620219 MTIF2P46199 727 aaKnown RBP17.67■□□□□ 0.42
CPSF1-213ENST00000620219 ARID5BQ14865 1188 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 LMNB1P20700 586 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 HMGCS2P54868 508 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 C7orf43Q8WVR3 580 aa17.67■□□□□ 0.42
CPSF1-213ENST00000620219 XPO4Q9C0E2 1151 aaKnown RBP17.67■□□□□ 0.42
CPSF1-213ENST00000620219 KRT26Q7Z3Y9 468 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 PRR12Q9ULL5 1215 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 TESPA1A2RU30 521 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-213ENST00000620219 PSMA7O14818 248 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 EHD4Q9H223 541 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 ASTN2O75129 1339 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-213ENST00000620219 CACNB1Q02641 598 aaPredicted RBP17.66■□□□□ 0.42
CPSF1-213ENST00000620219 UPF1Q92900 1129 aaKnown RBP eCLIP17.66■□□□□ 0.42
CPSF1-213ENST00000620219 FANCLQ9NW38 375 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 NFKBIEO00221 500 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 ADAMTS3O15072 1205 aa17.66■□□□□ 0.42
CPSF1-213ENST00000620219 METTL16Q86W50 562 aaKnown RBP17.66■□□□□ 0.42
CPSF1-213ENST00000620219 EGFRP00533 1210 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 SLFN14P0C7P3 912 aa17.65■□□□□ 0.42
CPSF1-213ENST00000620219 IRX3P78415 501 aaPredicted RBP17.65■□□□□ 0.42
CPSF1-213ENST00000620219 NOLC1Q14978 699 aaKnown RBP eCLIP17.65■□□□□ 0.42
CPSF1-213ENST00000620219 TPH2Q8IWU9 490 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms