RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TMTC2Q8N394 836 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 SENP6Q9GZR1 1112 aaPredicted RBP16.49■□□□□ 0.23
LIG1-218ENST00000599322 UBA5Q9GZZ9 404 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 VAT1LQ9HCJ6 419 aa16.49■□□□□ 0.23
LIG1-218ENST00000599322 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.49■□□□□ 0.23
LIG1-218ENST00000599322 A0A1W2PPC1 479 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 MCM5P33992 734 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 NOL8Q76FK4 1167 aaKnown RBP16.48■□□□□ 0.23
LIG1-218ENST00000599322 CYB5R4Q7L1T6 521 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 MCF2L2Q86YR7 1114 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 C7orf61Q8IZ16 206 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 MTA3Q9BTC8 594 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 CYP39A1Q9NYL5 469 aa16.48■□□□□ 0.23
LIG1-218ENST00000599322 LOC102724159A0A0B4J2E5 919 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 CNTN2Q02246 1040 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 PWP2Q15269 919 aaKnown RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 CDC37Q16543 378 aaPredicted RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 USH1GQ495M9 461 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 MUM1L1Q5H9M0 696 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 GJC2Q5T442 439 aaPredicted RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 NFXL1Q6ZNB6 911 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 RNF207Q6ZRF8 634 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 ARMCX2Q7L311 632 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 FBXO11Q86XK2 927 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 CCDC144CPQ8IYA2 1237 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 ADGRF4Q8IZF3 695 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 FAM133AQ8N9E0 248 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 GDF15Q99988 308 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 MAF1Q9H063 256 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 LSG1Q9H089 658 aaKnown RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 PRKAG2Q9UGJ0 569 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 ZMYND8Q9ULU4 1186 aaPredicted RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 MRPL11Q9Y3B7 192 aaKnown RBP16.47■□□□□ 0.23
LIG1-218ENST00000599322 DNAH12Q6ZR08 3092 aa16.47■□□□□ 0.23
LIG1-218ENST00000599322 ABCB11O95342 1321 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 COL6A3P12111 3177 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 CCDC69A6NI79 296 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 KLRF2D3W0D1 207 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 SNAI1O95863 264 aaPredicted RBP16.46■□□□□ 0.23
LIG1-218ENST00000599322 ZNF865P0CJ78 1059 aaPredicted RBP16.46■□□□□ 0.23
LIG1-218ENST00000599322 CALML3P27482 149 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 KIF5BP33176 963 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 BAATQ14032 418 aaPredicted RBP16.46■□□□□ 0.23
LIG1-218ENST00000599322 SEC23AQ15436 765 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 CREB3L3Q68CJ9 461 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 SYNE3Q6ZMZ3 975 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 CTCFLQ8NI51 663 aaPredicted RBP16.46■□□□□ 0.23
LIG1-218ENST00000599322 LRCH3Q96II8 777 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 TMEM87BQ96K49 555 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 PPP4R2Q9NY27 417 aa16.46■□□□□ 0.23
LIG1-218ENST00000599322 SLC27A2O14975 620 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 DUSP11O75319 330 aaKnown RBP16.45■□□□□ 0.22
LIG1-218ENST00000599322 COL6A1P12109 1028 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 KRT32Q14532 448 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 CHST3Q7LGC8 479 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 NUP133Q8WUM0 1156 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 AMNQ9BXJ7 453 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 AP5M1Q9H0R1 490 aa16.45■□□□□ 0.22
LIG1-218ENST00000599322 PLXNA1Q9UIW2 1896 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 SOWAHBA6NEL2 793 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 NFIBO00712 420 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 PRC1O43663 620 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 TAL1P17542 331 aaPredicted RBP16.44■□□□□ 0.22
LIG1-218ENST00000599322 SYN1P17600 705 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 BMP8BP34820 402 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 GNAQP50148 359 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 PDE4DQ08499 809 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 LRRC41Q15345 812 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 CCDC144BQ3MJ40 725 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 PCSK9Q8NBP7 692 aaKnown RBP16.44■□□□□ 0.22
LIG1-218ENST00000599322 RGS22Q8NE09 1264 aa16.44■□□□□ 0.22
LIG1-218ENST00000599322 ZEB2O60315 1214 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 REC8O95072 547 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 PGK1P00558 417 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 CALM1P0DP23 149 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 CALM2P0DP24 149 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 CALM3P0DP25 149 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 ADCYAP1R1P41586 468 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 ATN1P54259 1190 aaPredicted RBP16.43■□□□□ 0.22
LIG1-218ENST00000599322 FGD1P98174 961 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 TNFAIP2Q03169 654 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 GRM4Q14833 912 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 NECTIN1Q15223 517 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 QRICH1Q2TAL8 776 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 IQSEC1Q6DN90 963 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 SKAP1Q86WV1 359 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 MB21D2Q8IYB1 491 aaPredicted RBP16.43■□□□□ 0.22
LIG1-218ENST00000599322 DNERQ8NFT8 737 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 VTI1AQ96AJ9 217 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 LZTS2Q9BRK4 669 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 TSEN34Q9BSV6 310 aaKnown RBP16.43■□□□□ 0.22
LIG1-218ENST00000599322 CPVLQ9H3G5 476 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 JMJD4Q9H9V9 463 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 VTA1Q9NP79 307 aa16.43■□□□□ 0.22
LIG1-218ENST00000599322 LTBP2Q14767 1821 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 PALM3A6NDB9 673 aaPredicted RBP16.42■□□□□ 0.22
LIG1-218ENST00000599322 ZBTB5O15062 677 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 DDAH1O94760 285 aa16.42■□□□□ 0.22
LIG1-218ENST00000599322 C6orf222P0C671 652 aaPredicted RBP16.42■□□□□ 0.22
LIG1-218ENST00000599322 ALDH5A1P51649 535 aaPredicted RBP16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms