RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 ADSSL1Q8N142 457 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 KCNQ2O43526 872 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 MYBL2P10244 700 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 HIBADHP31937 336 aaKnown RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 PARP10Q53GL7 1025 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 SND1Q7KZF4 910 aaKnown RBP eCLIP17.03■□□□□ 0.32
UPF1-204ENST00000596842 AFAP1L1Q8TED9 768 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 TGFBRAP1Q8WUH2 860 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 NSUN4Q96CB9 384 aaKnown RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 ANKIB1Q9P2G1 1089 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 RAB21Q9UL25 225 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 BUB1O43683 1085 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 LONP1P36776 959 aaKnown RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 EIF6P56537 245 aaKnown RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 DDB1Q16531 1140 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 TXNRD1Q16881 649 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 WDR59Q6PJI9 974 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 TXNRD3Q86VQ6 643 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 KANSL2Q9H9L4 492 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 BIN2Q9UBW5 565 aaPredicted RBP17.03■□□□□ 0.32
UPF1-204ENST00000596842 SRCAPQ6ZRS2 3230 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 GGCXP38435 758 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 LRRC41Q15345 812 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 ANKRD40Q6AI12 368 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 CDK5RAP3Q96JB5 506 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 UBA5Q9GZZ9 404 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 ZHX3Q9H4I2 956 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 PCDHA4Q9UN74 947 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 ITIH6Q6UXX5 1313 aa17.03■□□□□ 0.32
UPF1-204ENST00000596842 MOCS3O95396 460 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 CCDC70Q6NSX1 233 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 BRIP1Q9BX63 1249 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 NLRC4Q9NPP4 1024 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 MAP9Q49MG5 647 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 NAALADL2Q58DX5 795 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 CT47A1Q5JQC4 288 aaPredicted RBP17.02■□□□□ 0.32
UPF1-204ENST00000596842 HNRNPLLQ8WVV9 542 aaKnown RBP17.02■□□□□ 0.32
UPF1-204ENST00000596842 TBC1D7Q9P0N9 293 aa17.02■□□□□ 0.32
UPF1-204ENST00000596842 PDE2AO00408 941 aaPredicted RBP17.02■□□□□ 0.31
UPF1-204ENST00000596842 NCK2O43639 380 aa17.02■□□□□ 0.31
UPF1-204ENST00000596842 USP14P54578 494 aa17.02■□□□□ 0.31
UPF1-204ENST00000596842 FAM71BQ8TC56 605 aa17.02■□□□□ 0.31
UPF1-204ENST00000596842 JRKLQ9Y4A0 524 aa17.02■□□□□ 0.31
UPF1-204ENST00000596842 DNM2P50570 870 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 ANAPC4Q9UJX5 808 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 ZNF652Q9Y2D9 606 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 MYH6P13533 1939 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 USP17L2Q6R6M4 530 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 RRAGAQ7L523 313 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 CACNA2D4Q7Z3S7 1137 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 HDAC7Q8WUI4 952 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 IFIH1Q9BYX4 1025 aaKnown RBP17.01■□□□□ 0.31
UPF1-204ENST00000596842 PKD1L3Q7Z443 1732 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 RCAN1P53805 252 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 SRLQ86TD4 932 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 CCDC155Q8N6L0 562 aa17.01■□□□□ 0.31
UPF1-204ENST00000596842 LRRC10BA6NIK2 292 aa17■□□□□ 0.31
UPF1-204ENST00000596842 AMPD2Q01433 879 aa17■□□□□ 0.31
UPF1-204ENST00000596842 SOGA3Q5TF21 947 aa17■□□□□ 0.31
UPF1-204ENST00000596842 ICE2Q659A1 982 aa17■□□□□ 0.31
UPF1-204ENST00000596842 TRAPPC11Q7Z392 1133 aa17■□□□□ 0.31
UPF1-204ENST00000596842 TMC4Q7Z404 712 aa17■□□□□ 0.31
UPF1-204ENST00000596842 AMOTL1Q8IY63 956 aa17■□□□□ 0.31
UPF1-204ENST00000596842 RUFY1Q96T51 708 aa17■□□□□ 0.31
UPF1-204ENST00000596842 TUBB2AQ13885 445 aa17■□□□□ 0.31
UPF1-204ENST00000596842 UBE4AQ14139 1066 aa17■□□□□ 0.31
UPF1-204ENST00000596842 GJA10Q969M2 543 aa17■□□□□ 0.31
UPF1-204ENST00000596842 PYM1Q9BRP8 204 aaKnown RBP17■□□□□ 0.31
UPF1-204ENST00000596842 TUBB2BQ9BVA1 445 aa17■□□□□ 0.31
UPF1-204ENST00000596842 EHD4Q9H223 541 aa17■□□□□ 0.31
UPF1-204ENST00000596842 MYO1AQ9UBC5 1043 aa17■□□□□ 0.31
UPF1-204ENST00000596842 PCDHA6Q9UN73 950 aa17■□□□□ 0.31
UPF1-204ENST00000596842 PCDHA8Q9Y5H6 950 aa17■□□□□ 0.31
UPF1-204ENST00000596842 NFRKBQ6P4R8 1299 aa17■□□□□ 0.31
UPF1-204ENST00000596842 SELENOOQ9BVL4 669 aa17■□□□□ 0.31
UPF1-204ENST00000596842 BCL9O00512 1426 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 KLRF2D3W0D1 207 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 TRAPPC10P48553 1259 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 RPS8P62241 208 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 NBPF5PQ86XG9 351 aaPredicted RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 LRRC15Q8TF66 581 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 COG1Q8WTW3 980 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 P2RX5Q93086 422 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 SRP68Q9UHB9 627 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 CAPN11Q9UMQ6 739 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 TULP2O00295 520 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 IVLP07476 585 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 PDE6BP35913 854 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 KCTD16Q68DU8 428 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 RCSD1Q6JBY9 416 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 IFT81Q8WYA0 676 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 CAPN6Q9Y6Q1 641 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 GOLGA6BA6NDN3 693 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 SMCO2A6NFE2 343 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 USO1O60763 962 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 EEF1GP26641 437 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 CKAP4Q07065 602 aaKnown RBP16.99■□□□□ 0.31
UPF1-204ENST00000596842 MUM1L1Q5H9M0 696 aa16.99■□□□□ 0.31
UPF1-204ENST00000596842 SH3RF3Q8TEJ3 882 aaPredicted RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms