RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 ADGRF4Q8IZF3 695 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 ANO2Q9NQ90 1003 aa17.33■□□□□ 0.36
SS18-212ENST00000579061 SLC27A2O14975 620 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 LRRC41Q15345 812 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 GJC2Q5T442 439 aaPredicted RBP17.32■□□□□ 0.36
SS18-212ENST00000579061 CCDC144CPQ8IYA2 1237 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 RGS22Q8NE09 1264 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 CLEC4DQ8WXI8 215 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 SENP6Q9GZR1 1112 aaPredicted RBP17.32■□□□□ 0.36
SS18-212ENST00000579061 XPNPEP3Q9NQH7 507 aa17.32■□□□□ 0.36
SS18-212ENST00000579061 ADD3Q9UEY8 706 aaKnown RBP17.32■□□□□ 0.36
SS18-212ENST00000579061 ZHX1Q9UKY1 873 aaPredicted RBP17.32■□□□□ 0.36
SS18-212ENST00000579061 DNAH12Q6ZR08 3092 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 NFIBO00712 420 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 DUSP11O75319 330 aaKnown RBP17.31■□□□□ 0.36
SS18-212ENST00000579061 ANTXR2P58335 489 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 BAATQ14032 418 aaPredicted RBP17.31■□□□□ 0.36
SS18-212ENST00000579061 CDC37Q16543 378 aaPredicted RBP17.31■□□□□ 0.36
SS18-212ENST00000579061 RNF20Q5VTR2 975 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 CREB3L3Q68CJ9 461 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 RNF180Q86T96 592 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 IGDCC4Q8TDY8 1250 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 MORC4Q8TE76 937 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 KATNBL1Q9H079 304 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 CPVLQ9H3G5 476 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 JMJD4Q9H9V9 463 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 MAD2L2Q9UI95 211 aa17.31■□□□□ 0.36
SS18-212ENST00000579061 LRRC37A2A6NM11 1700 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 ASTN1O14525 1302 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 ABCB11O95342 1321 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 PALM3A6NDB9 673 aaPredicted RBP17.3■□□□□ 0.36
SS18-212ENST00000579061 KLRF2D3W0D1 207 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 MCM5P33992 734 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 GRM4Q14833 912 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 LRRC26Q2I0M4 334 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 CCDC144BQ3MJ40 725 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 TMEM67Q5HYA8 995 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 RNF207Q6ZRF8 634 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 STAG2Q8N3U4 1231 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 MTMR8Q96EF0 704 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 TMEM87BQ96K49 555 aa17.3■□□□□ 0.36
SS18-212ENST00000579061 TSEN34Q9BSV6 310 aaKnown RBP17.3■□□□□ 0.36
SS18-212ENST00000579061 BAZ2BQ9UIF8 2168 aaKnown RBP17.29■□□□□ 0.36
SS18-212ENST00000579061 PTPDC1A2A3K4 754 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 DHX16O60231 1041 aaKnown RBP17.29■□□□□ 0.36
SS18-212ENST00000579061 ADAMTS4O75173 837 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 TROAPQ12815 778 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 QRICH1Q2TAL8 776 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 CHST3Q7LGC8 479 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 C7orf61Q8IZ16 206 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 TMTC2Q8N394 836 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 DNERQ8NFT8 737 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 MAP3K14Q99558 947 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 PHF24Q9UPV7 400 aa17.29■□□□□ 0.36
SS18-212ENST00000579061 PRC1O43663 620 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 PGK1P00558 417 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 CENPBP07199 599 aaPredicted RBP17.28■□□□□ 0.36
SS18-212ENST00000579061 ALDH5A1P51649 535 aaPredicted RBP17.28■□□□□ 0.36
SS18-212ENST00000579061 RPS6P62753 249 aaKnown RBP17.28■□□□□ 0.36
SS18-212ENST00000579061 TSGA10IPQ3SY00 556 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 USH1GQ495M9 461 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 CATIPQ7Z7H3 387 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 FBXO11Q86XK2 927 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 KLHDC9Q8NEP7 349 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 RIOX1Q9H6W3 641 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 LY9Q9HBG7 655 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 SENP2Q9HC62 589 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 VAT1LQ9HCJ6 419 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 VTA1Q9NP79 307 aa17.28■□□□□ 0.36
SS18-212ENST00000579061 MRPL11Q9Y3B7 192 aaKnown RBP17.28■□□□□ 0.36
SS18-212ENST00000579061 SYNRGQ9UMZ2 1314 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 ZBTB5O15062 677 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 DDAH1O94760 285 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 CST5P28325 142 aaPredicted RBP17.27■□□□□ 0.36
SS18-212ENST00000579061 ADCYAP1R1P41586 468 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 LIFRP42702 1097 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 GJA9P57773 515 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 NKX3-2P78367 333 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 TRAF1Q13077 416 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 SNX17Q15036 470 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 HABP4Q5JVS0 413 aaKnown RBP17.27■□□□□ 0.36
SS18-212ENST00000579061 C1orf53Q5VUE5 145 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 SLC30A10Q6XR72 485 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 SLC39A5Q6ZMH5 540 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 MCF2L2Q86YR7 1114 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 MPHOSPH6Q99547 160 aaKnown RBP17.27■□□□□ 0.36
SS18-212ENST00000579061 AMNQ9BXJ7 453 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 UPF3AQ9H1J1 476 aaKnown RBP17.27■□□□□ 0.36
SS18-212ENST00000579061 PRO3102Q9H379 93 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 SPC25Q9HBM1 224 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 PPP4R2Q9NY27 417 aa17.27■□□□□ 0.36
SS18-212ENST00000579061 COLQQ9Y215 455 aaPredicted RBP17.27■□□□□ 0.36
SS18-212ENST00000579061 MOXD2PA6NHM9 499 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 B4DLN1 442 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 ADCY6O43306 1168 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 MYCNP04198 464 aaPredicted RBP17.26■□□□□ 0.35
SS18-212ENST00000579061 CALML3P27482 149 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 MRPL12P52815 198 aaKnown RBP17.26■□□□□ 0.35
SS18-212ENST00000579061 IQSEC1Q6DN90 963 aa17.26■□□□□ 0.35
SS18-212ENST00000579061 CCSAPQ6IQ19 270 aaPredicted RBP17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms