RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 STAG2Q8N3U4 1231 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 CLEC4DQ8WXI8 215 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 ABHD16BQ9H3Z7 469 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 SENP2Q9HC62 589 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 VAT1LQ9HCJ6 419 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 XPNPEP3Q9NQH7 507 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 PPP4R2Q9NY27 417 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 FAM184BQ9ULE4 1060 aa23.5■■□□□ 1.35
NUP88-204ENST00000572290 KBTBD13C9JR72 458 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 MYCNP04198 464 aaPredicted RBP23.49■■□□□ 1.35
NUP88-204ENST00000572290 USH1GQ495M9 461 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 RNF20Q5VTR2 975 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 IGDCC4Q8TDY8 1250 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 MTA3Q9BTC8 594 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 SENP6Q9GZR1 1112 aaPredicted RBP23.49■■□□□ 1.35
NUP88-204ENST00000572290 JMJD4Q9H9V9 463 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 MAD2L2Q9UI95 211 aa23.49■■□□□ 1.35
NUP88-204ENST00000572290 PTPDC1A2A3K4 754 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 PALM3A6NDB9 673 aaPredicted RBP23.48■■□□□ 1.35
NUP88-204ENST00000572290 KLRF2D3W0D1 207 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 PRC1O43663 620 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 MCM5P33992 734 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 GRM4Q14833 912 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 LRRC41Q15345 812 aa23.48■■□□□ 1.35
NUP88-204ENST00000572290 QRICH1Q2TAL8 776 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 RNF207Q6ZRF8 634 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 CATIPQ7Z7H3 387 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 C7orf61Q8IZ16 206 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 PURBQ96QR8 312 aaKnown RBP23.47■■□□□ 1.35
NUP88-204ENST00000572290 ADD3Q9UEY8 706 aaKnown RBP23.47■■□□□ 1.35
NUP88-204ENST00000572290 ASTN1O14525 1302 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 PDE4DIPQ5VU43 2346 aa23.47■■□□□ 1.35
NUP88-204ENST00000572290 ABCB11O95342 1321 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 PGK1P00558 417 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 CALML3P27482 149 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 TROAPQ12815 778 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 SLC30A10Q6XR72 485 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 RNF180Q86T96 592 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 FBXO11Q86XK2 927 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 LENG1Q96BZ8 264 aaPredicted RBP23.46■■□□□ 1.35
NUP88-204ENST00000572290 KATNBL1Q9H079 304 aa23.46■■□□□ 1.35
NUP88-204ENST00000572290 RPS6P62753 249 aaKnown RBP23.45■■□□□ 1.34
NUP88-204ENST00000572290 LRRC26Q2I0M4 334 aa23.45■■□□□ 1.34
NUP88-204ENST00000572290 CCDC144BQ3MJ40 725 aa23.45■■□□□ 1.34
NUP88-204ENST00000572290 RGS22Q8NE09 1264 aa23.45■■□□□ 1.34
NUP88-204ENST00000572290 TMEM87BQ96K49 555 aa23.45■■□□□ 1.34
NUP88-204ENST00000572290 LY9Q9HBG7 655 aa23.45■■□□□ 1.34
NUP88-204ENST00000572290 GPHNQ9NQX3 736 aaPredicted RBP23.45■■□□□ 1.34
NUP88-204ENST00000572290 SH2B2O14492 632 aaPredicted RBP23.44■■□□□ 1.34
NUP88-204ENST00000572290 DUSP11O75319 330 aaKnown RBP23.44■■□□□ 1.34
NUP88-204ENST00000572290 TMTC2Q8N394 836 aa23.44■■□□□ 1.34
NUP88-204ENST00000572290 NUP133Q8WUM0 1156 aa23.44■■□□□ 1.34
NUP88-204ENST00000572290 DDX49Q9Y6V7 483 aaKnown RBP23.44■■□□□ 1.34
NUP88-204ENST00000572290 LOC102724159A0A0B4J2E5 919 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 ADAMTS4O75173 837 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 ALDH5A1P51649 535 aaPredicted RBP23.43■■□□□ 1.34
NUP88-204ENST00000572290 ATN1P54259 1190 aaPredicted RBP23.43■■□□□ 1.34
NUP88-204ENST00000572290 COL9A3Q14050 684 aaPredicted RBP23.43■■□□□ 1.34
NUP88-204ENST00000572290 PWP2Q15269 919 aaKnown RBP23.43■■□□□ 1.34
NUP88-204ENST00000572290 NFXL1Q6ZNB6 911 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 ZNF654Q8IZM8 581 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 MORC4Q8TE76 937 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 MTMR8Q96EF0 704 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 AMNQ9BXJ7 453 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 MAF1Q9H063 256 aa23.43■■□□□ 1.34
NUP88-204ENST00000572290 MRPL11Q9Y3B7 192 aaKnown RBP23.43■■□□□ 1.34
NUP88-204ENST00000572290 SYNRGQ9UMZ2 1314 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 ZBTB5O15062 677 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 DDAH1O94760 285 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 ADCYAP1R1P41586 468 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 MCF2L2Q86YR7 1114 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 NEK1Q96PY6 1258 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 MAP3K14Q99558 947 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 RIOX1Q9H6W3 641 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 PHF24Q9UPV7 400 aa23.42■■□□□ 1.34
NUP88-204ENST00000572290 ZNFX1Q9P2E3 1918 aaKnown RBP23.41■■□□□ 1.34
NUP88-204ENST00000572290 CCDC69A6NI79 296 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 ADCY6O43306 1168 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 LIFRP42702 1097 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 SLC35G1Q2M3R5 365 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 TSGA10IPQ3SY00 556 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 EEPD1Q7L9B9 569 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 HOMER1Q86YM7 354 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 FBXO16Q8IX29 292 aaPredicted RBP23.41■■□□□ 1.34
NUP88-204ENST00000572290 DNERQ8NFT8 737 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 CTCFLQ8NI51 663 aaPredicted RBP23.41■■□□□ 1.34
NUP88-204ENST00000572290 FERMT2Q96AC1 680 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 MYL10Q9BUA6 226 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 SPC25Q9HBM1 224 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 VTA1Q9NP79 307 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 ZMYND8Q9ULU4 1186 aaPredicted RBP23.41■■□□□ 1.34
NUP88-204ENST00000572290 PLXNA1Q9UIW2 1896 aa23.41■■□□□ 1.34
NUP88-204ENST00000572290 TNFAIP2Q03169 654 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 KRT32Q14532 448 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 CHRDL2Q6WN34 429 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 SLC39A5Q6ZMH5 540 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 RASEFQ8IZ41 740 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 KLHDC9Q8NEP7 349 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 TBC1D5Q92609 795 aa23.4■■□□□ 1.34
NUP88-204ENST00000572290 PIGSQ96S52 555 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms