RNA–Protein interactions for RNA: ENST00000568291.2

SF3B3-211, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,067 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-211ENST00000568291 STAG2Q8N3U4 1231 aa11.14□□□□□ -0.63
SF3B3-211ENST00000568291 LENG1Q96BZ8 264 aaPredicted RBP11.14□□□□□ -0.63
SF3B3-211ENST00000568291 FAM161BQ96MY7 647 aa11.14□□□□□ -0.63
SF3B3-211ENST00000568291 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
SF3B3-211ENST00000568291 PDLIM7Q9NR12 457 aa11.14□□□□□ -0.63
SF3B3-211ENST00000568291 RNF146Q9NTX7 359 aa11.14□□□□□ -0.63
SF3B3-211ENST00000568291 LRRC37A2A6NM11 1700 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 IFIT3O14879 490 aaKnown RBP11.13□□□□□ -0.63
SF3B3-211ENST00000568291 ATP2A1O14983 1001 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 CENPBP07199 599 aaPredicted RBP11.13□□□□□ -0.63
SF3B3-211ENST00000568291 ADCYAP1R1P41586 468 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 ANTXR2P58335 489 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 TRDNQ13061 729 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 SEC23AQ15436 765 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 IFIT1BQ5T764 474 aaKnown RBP11.13□□□□□ -0.63
SF3B3-211ENST00000568291 ZNF697Q5TEC3 545 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 FAM109BQ6ICB4 259 aaPredicted RBP11.13□□□□□ -0.63
SF3B3-211ENST00000568291 NSMFQ6X4W1 530 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 RAB11FIP4Q86YS3 637 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 ANKS1AQ92625 1134 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 FERMT2Q96AC1 680 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 GUCD1Q96NT3 240 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 LRRC2Q9BYS8 371 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 CNNM2Q9H8M5 875 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 XPNPEP3Q9NQH7 507 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 CCPG1Q9ULG6 757 aa11.13□□□□□ -0.63
SF3B3-211ENST00000568291 DNAH12Q6ZR08 3092 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 SOWAHBA6NEL2 793 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 POTEB2H3BUK9 544 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 NFIBO00712 420 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 DHX16O60231 1041 aaKnown RBP11.12□□□□□ -0.63
SF3B3-211ENST00000568291 PLA2G6O60733 806 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 CDC45O75419 566 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 SNHG28P0DPA3 235 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 RARBP10826 455 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 PTGS1P23219 599 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 COPB2P35606 906 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 IRX5P78411 483 aaPredicted RBP11.12□□□□□ -0.63
SF3B3-211ENST00000568291 NECTIN1Q15223 517 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 USH1GQ495M9 461 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 C9orf50Q5SZB4 431 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 CREB3L3Q68CJ9 461 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 BTNL9Q6UXG8 535 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 RALYLQ86SE5 291 aaKnown RBP11.12□□□□□ -0.63
SF3B3-211ENST00000568291 RASEFQ8IZ41 740 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 NCOA7Q8NI08 942 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 PIBF1Q8WXW3 757 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 FGD4Q96M96 766 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 TINF2Q9BSI4 451 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 MYL10Q9BUA6 226 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 RANBP17Q9H2T7 1088 aaKnown RBP11.12□□□□□ -0.63
SF3B3-211ENST00000568291 A1CFQ9NQ94 594 aaKnown RBP11.12□□□□□ -0.63
SF3B3-211ENST00000568291 PPP4R2Q9NY27 417 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 NRBP1Q9UHY1 535 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 PHF24Q9UPV7 400 aa11.12□□□□□ -0.63
SF3B3-211ENST00000568291 DNAJC25-GNG10A0A024R161 153 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 SNAI1O95863 264 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-211ENST00000568291 ICAM1P05362 532 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 OAZ1P54368 228 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 SHHQ15465 462 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 SLC35G1Q2M3R5 365 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 TMEM67Q5HYA8 995 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 SH3RF1Q7Z6J0 888 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 MB21D2Q8IYB1 491 aaPredicted RBP11.11□□□□□ -0.63
SF3B3-211ENST00000568291 ADGRF4Q8IZF3 695 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 CHST13Q8NET6 341 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 TBC1D5Q92609 795 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 BADQ92934 168 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 TCEANC2Q96MN5 208 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 ACAD9Q9H845 621 aa11.11□□□□□ -0.63
SF3B3-211ENST00000568291 MYO9BQ13459 2157 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 A0A1W2PQ45 241 aaPredicted RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 A0A1W2PQY0 241 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 TRIM43BA6NCK2 446 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 PRC1O43663 620 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 PGK1P00558 417 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 PARP1P09874 1014 aaKnown RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 AKR1A1P14550 325 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 CPA1P15085 419 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 RXRAP19793 462 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 TLE2Q04725 743 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 BAATQ14032 418 aaPredicted RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 WTAPQ15007 396 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 ADCK5Q3MIX3 580 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 CCDC178Q5BJE1 867 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 TMEM63BQ5T3F8 832 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 C1orf53Q5VUE5 145 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 EEPD1Q7L9B9 569 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 RNF180Q86T96 592 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 IGDCC4Q8TDY8 1250 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 NUP133Q8WUM0 1156 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 CLEC4DQ8WXI8 215 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 TRIM43Q96BQ3 446 aaPredicted RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 JMJD4Q9H9V9 463 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 ZHX1Q9UKY1 873 aaPredicted RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 CNPY2Q9Y2B0 182 aa11.1□□□□□ -0.63
SF3B3-211ENST00000568291 DIS3Q9Y2L1 958 aaKnown RBP11.1□□□□□ -0.63
SF3B3-211ENST00000568291 ASTN1O14525 1302 aa11.09□□□□□ -0.63
SF3B3-211ENST00000568291 PTPDC1A2A3K4 754 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms