RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 DEAF1O75398 565 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 PFKFB1P16118 471 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 FLIIQ13045 1269 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 ZC3H15Q8WU90 426 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 NECTIN2Q92692 538 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 hCG_2014768A0A024R1R8 64 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 B4DLN1 442 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 H0YC42 278 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 H7C1D1 291 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 HSPA13P48723 471 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 HDAC4P56524 1084 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 TUBA3CQ13748 450 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 DZIP3Q86Y13 1208 aaKnown RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 DRAXINQ8NBI3 349 aaPredicted RBP6.83□□□□□ -1.32
CLK3-212ENST00000563418 CD2APQ9Y5K6 639 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 MYOM2P54296 1465 aa6.83□□□□□ -1.32
CLK3-212ENST00000563418 RASGRF1Q13972 1273 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 CATIPQ7Z7H3 387 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 ZBTB43O43298 467 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 CYTH3O43739 400 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 CCDC15Q0P6D6 951 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 BZW1Q7L1Q6 419 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 USP37Q86T82 979 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 NBPF15Q8N660 670 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 ZSWIM6Q9HCJ5 1215 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 ABCC4O15439 1325 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 O00370 1275 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 APOEP02649 317 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 VSNL1P62760 191 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 CCDC14Q49A88 953 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 SFMBT2Q5VUG0 894 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 MGARPQ8TDB4 240 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 PPP4R1Q8TF05 950 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 SH3GL2Q99962 352 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.82□□□□□ -1.32
CLK3-212ENST00000563418 BZW2Q9Y6E2 419 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 GYG2O15488 501 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 KRR1Q13601 381 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 TAF1DQ9H5J8 278 aaPredicted RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 CHMP2AO43633 222 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 DDHD1Q8NEL9 900 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 AMFRQ9UKV5 643 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 DIS3Q9Y2L1 958 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 ADGRL3Q9HAR2 1447 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 MFAP3LO75121 409 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 NDUFA10O95299 355 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 GNA14O95837 355 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 MTTPP55157 894 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 GUCY1A3Q02108 690 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 RARS2Q5T160 578 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 IRGCQ6NXR0 463 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 LRGUKQ96M69 825 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 SH3GL1Q99961 368 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 KRT8P05787 483 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 STAT2P52630 851 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 DSG1Q02413 1049 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 RSRC2Q7L4I2 434 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 MAK16Q9BXY0 300 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 FAM96AQ9H5X1 160 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 CARD8Q9Y2G2 431 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 RTL9Q8NET4 1388 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 IPO5O00410 1097 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 STX17P56962 302 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 C2orf54Q08AI8 447 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 DCTN2Q13561 401 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 ANKRD42Q8N9B4 389 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 BOLA2Q9H3K6 86 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 EEF2P13639 858 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 POLR2EP19388 210 aaKnown RBP6.82□□□□□ -1.32
CLK3-212ENST00000563418 RAB15P59190 212 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 TOGARAM2Q6ZUX3 1019 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 ZMYND12Q9H0C1 365 aa6.82□□□□□ -1.32
CLK3-212ENST00000563418 SLC27A2O14975 620 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 PPIP5K2O43314 1243 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 KRT72Q14CN4 511 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ME3Q16798 604 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 DPCR1Q3MIW9 517 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 FRA10AC1Q70Z53 315 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 MPP4Q96JB8 637 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 VPS16Q9H269 839 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 SPINK5Q9NQ38 1064 aaPredicted RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 RCOR1Q9UKL0 485 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 RAB21Q9UL25 225 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 R3HDM2Q9Y2K5 976 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 HSPA1LP34931 641 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ASIC2Q16515 512 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 NCAPH2Q6IBW4 605 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 NOVA2Q9UNW9 492 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 CHMP2BQ9UQN3 213 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 USP15Q9Y4E8 981 aaPredicted RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 PPIP5K1Q6PFW1 1433 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 THAP12O43422 761 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 KRT10P13645 584 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 CALML3P27482 149 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 BYSLQ13895 437 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 DHX40Q8IX18 779 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 MYCBPAPQ8TBZ2 947 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 TRIM11Q96F44 468 aa6.81□□□□□ -1.32
CLK3-212ENST00000563418 ZFRQ96KR1 1074 aaKnown RBP6.81□□□□□ -1.32
CLK3-212ENST00000563418 NLRP1Q9C000 1473 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms