RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 ADCY6O43306 1168 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 DUSP11O75319 330 aaKnown RBP16.49■□□□□ 0.23
SMPD3-204ENST00000563396 CST5P28325 142 aaPredicted RBP16.49■□□□□ 0.23
SMPD3-204ENST00000563396 NKX3-2P78367 333 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 PWP2Q15269 919 aaKnown RBP16.49■□□□□ 0.23
SMPD3-204ENST00000563396 SEC23AQ15436 765 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 RNF180Q86T96 592 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 MORC4Q8TE76 937 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 UPF3AQ9H1J1 476 aaKnown RBP16.49■□□□□ 0.23
SMPD3-204ENST00000563396 KAT14Q9H8E8 782 aa16.49■□□□□ 0.23
SMPD3-204ENST00000563396 ASB14A6NK59 587 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 NFIBO00712 420 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 PGK1P00558 417 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 RTP1P59025 263 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 CCSAPQ6IQ19 270 aaPredicted RBP16.48■□□□□ 0.23
SMPD3-204ENST00000563396 KLHDC9Q8NEP7 349 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 UBAC1Q9BSL1 405 aa16.48■□□□□ 0.23
SMPD3-204ENST00000563396 TSEN34Q9BSV6 310 aaKnown RBP16.48■□□□□ 0.23
SMPD3-204ENST00000563396 SYN1P17600 705 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 MAGEA10P43363 369 aaPredicted RBP16.47■□□□□ 0.23
SMPD3-204ENST00000563396 ATN1P54259 1190 aaPredicted RBP16.47■□□□□ 0.23
SMPD3-204ENST00000563396 CCDC144BQ3MJ40 725 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 SLC39A5Q6ZMH5 540 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 CYB5R4Q7L1T6 521 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 CLEC4DQ8WXI8 215 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 MAP4K1Q92918 833 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 MAF1Q9H063 256 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 TAF6LQ9Y6J9 622 aa16.47■□□□□ 0.23
SMPD3-204ENST00000563396 A0A1W2PQ45 241 aaPredicted RBP16.46■□□□□ 0.23
SMPD3-204ENST00000563396 A0A1W2PQY0 241 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 MOXD2PA6NHM9 499 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 GOLGA8HP0CJ92 632 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 ADCYAP1R1P41586 468 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 BMP2KLQ5H9B9 411 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 IFIT1BQ5T764 474 aaKnown RBP16.46■□□□□ 0.23
SMPD3-204ENST00000563396 NSMFQ6X4W1 530 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 SLC30A10Q6XR72 485 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 STOX1Q6ZVD7 989 aa16.46■□□□□ 0.23
SMPD3-204ENST00000563396 KIAA1217Q5T5P2 1943 aa16.45■□□□□ 0.22
SMPD3-204ENST00000563396 ALDH5A1P51649 535 aaPredicted RBP16.45■□□□□ 0.22
SMPD3-204ENST00000563396 GJA9P57773 515 aa16.45■□□□□ 0.22
SMPD3-204ENST00000563396 TRDNQ13061 729 aa16.45■□□□□ 0.22
SMPD3-204ENST00000563396 BAATQ14032 418 aaPredicted RBP16.45■□□□□ 0.22
SMPD3-204ENST00000563396 CDC37Q16543 378 aaPredicted RBP16.45■□□□□ 0.22
SMPD3-204ENST00000563396 CPVLQ9H3G5 476 aa16.45■□□□□ 0.22
SMPD3-204ENST00000563396 VTA1Q9NP79 307 aa16.45■□□□□ 0.22
SMPD3-204ENST00000563396 ADD3Q9UEY8 706 aaKnown RBP16.45■□□□□ 0.22
SMPD3-204ENST00000563396 MYADML2A6NDP7 307 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 E7EWF7 191 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 CTAGE5O15320 804 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 PARP1P09874 1014 aaKnown RBP16.44■□□□□ 0.22
SMPD3-204ENST00000563396 EDNRBP24530 442 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 ACLYP53396 1101 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 TRIM60Q495X7 471 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 MB21D2Q8IYB1 491 aaPredicted RBP16.44■□□□□ 0.22
SMPD3-204ENST00000563396 ADGRF4Q8IZF3 695 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 RGS22Q8NE09 1264 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 UBA5Q9GZZ9 404 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 LSG1Q9H089 658 aaKnown RBP16.44■□□□□ 0.22
SMPD3-204ENST00000563396 PDLIM7Q9NR12 457 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 GNEQ9Y223 722 aaKnown RBP16.44■□□□□ 0.22
SMPD3-204ENST00000563396 RBM8AQ9Y5S9 174 aaKnown RBP16.44■□□□□ 0.22
SMPD3-204ENST00000563396 ABCB11O95342 1321 aa16.44■□□□□ 0.22
SMPD3-204ENST00000563396 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 MYCNP04198 464 aaPredicted RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 RPS6P62753 249 aaKnown RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 TAPT1Q6NXT6 567 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 RNF207Q6ZRF8 634 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 RALYLQ86SE5 291 aaKnown RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 FBXO16Q8IX29 292 aaPredicted RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 NCOA7Q8NI08 942 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 FERMT2Q96AC1 680 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 MTMR8Q96EF0 704 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 PURBQ96QR8 312 aaKnown RBP16.43■□□□□ 0.22
SMPD3-204ENST00000563396 ESYT1Q9BSJ8 1104 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 ATP11BQ9Y2G3 1177 aa16.43■□□□□ 0.22
SMPD3-204ENST00000563396 PTPDC1A2A3K4 754 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 PALM3A6NDB9 673 aaPredicted RBP16.42■□□□□ 0.22
SMPD3-204ENST00000563396 C6orf222P0C671 652 aaPredicted RBP16.42■□□□□ 0.22
SMPD3-204ENST00000563396 ANTXR2P58335 489 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 GHRHRQ02643 423 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 KCNA10Q16322 511 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 QRICH1Q2TAL8 776 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 ANKRD33Q7Z3H0 272 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 TDHQ8IZJ6 230 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 PCSK9Q8NBP7 692 aaKnown RBP16.42■□□□□ 0.22
SMPD3-204ENST00000563396 DNERQ8NFT8 737 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 NUP133Q8WUM0 1156 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 MTA3Q9BTC8 594 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 JMJD4Q9H9V9 463 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 SPC25Q9HBM1 224 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 MAD2L2Q9UI95 211 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 DDX49Q9Y6V7 483 aaKnown RBP16.42■□□□□ 0.22
SMPD3-204ENST00000563396 ELP1O95163 1332 aa16.42■□□□□ 0.22
SMPD3-204ENST00000563396 ASGR1P07306 291 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 IRX5P78411 483 aaPredicted RBP16.41■□□□□ 0.22
SMPD3-204ENST00000563396 TNFAIP2Q03169 654 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 TROAPQ12815 778 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 GRM4Q14833 912 aa16.41■□□□□ 0.22
SMPD3-204ENST00000563396 USH1GQ495M9 461 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms