RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 A0A1W2PQ45 241 aaPredicted RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 A0A1W2PQY0 241 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 B4E1Z4 1266 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 KDM4AO75164 1064 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 DUSP11O75319 330 aaKnown RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 SNHG28P0DPA3 235 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 IRX5P78411 483 aaPredicted RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 KCNA10Q16322 511 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 IMMTQ16891 758 aaKnown RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 CCSAPQ6IQ19 270 aaPredicted RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 LRCH3Q96II8 777 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 LBHD1Q9BQE6 289 aaPredicted RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 TSEN34Q9BSV6 310 aaKnown RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 ZSWIM5Q9P217 1185 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 PRKAG2Q9UGJ0 569 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 DDX49Q9Y6V7 483 aaKnown RBP12.09□□□□□ -0.47
CLK3-205ENST00000561673 COL6A3P12111 3177 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 ASTN1O14525 1302 aa12.09□□□□□ -0.47
CLK3-205ENST00000561673 PLXNA1Q9UIW2 1896 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 SMCHD1A6NHR9 2005 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 MYADML2A6NDP7 307 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 ASB14A6NK59 587 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 GOLGA8HP0CJ92 632 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 NT5C2P49902 561 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 ACLYP53396 1101 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 TLE2Q04725 743 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 NSMFQ6X4W1 530 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 SH3RF1Q7Z6J0 888 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 IQCA1Q86XH1 822 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 ANKS1AQ92625 1134 aa12.08□□□□□ -0.48
CLK3-205ENST00000561673 PURBQ96QR8 312 aaKnown RBP12.08□□□□□ -0.48
CLK3-205ENST00000561673 ZSCAN10Q96SZ4 725 aaPredicted RBP12.08□□□□□ -0.48
CLK3-205ENST00000561673 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 TRIM43BA6NCK2 446 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 MOXD2PA6NHM9 499 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 NFIBO00712 420 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 C6orf222P0C671 652 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 CHMLP26374 656 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 GJA9P57773 515 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 BAATQ14032 418 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 LRIT3Q3SXY7 679 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 CCDC178Q5BJE1 867 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 ENAHQ8N8S7 591 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 PNMA1Q8ND90 353 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 NUP133Q8WUM0 1156 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 CLEC4DQ8WXI8 215 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 TRIM43Q96BQ3 446 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 UBA5Q9GZZ9 404 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 UPF3AQ9H1J1 476 aaKnown RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 PRDM5Q9NQX1 630 aaPredicted RBP12.07□□□□□ -0.48
CLK3-205ENST00000561673 PDLIM7Q9NR12 457 aa12.07□□□□□ -0.48
CLK3-205ENST00000561673 CTAGE5O15320 804 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 ASGR1P07306 291 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 CST5P28325 142 aaPredicted RBP12.06□□□□□ -0.48
CLK3-205ENST00000561673 TNFAIP2Q03169 654 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 PTH1RQ03431 593 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 GNASQ5JWF2 1037 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 GPATCH4Q5T3I0 446 aaKnown RBP12.06□□□□□ -0.48
CLK3-205ENST00000561673 NOL8Q76FK4 1167 aaKnown RBP12.06□□□□□ -0.48
CLK3-205ENST00000561673 BADQ92934 168 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 KRT23Q9C075 422 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 CPVLQ9H3G5 476 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 KAT14Q9H8E8 782 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 CNNM2Q9H8M5 875 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 SPC25Q9HBM1 224 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 STARD7Q9NQZ5 370 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 PDGFCQ9NRA1 345 aa12.06□□□□□ -0.48
CLK3-205ENST00000561673 PTPDC1A2A3K4 754 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 PQBP1O60828 265 aaKnown RBP12.05□□□□□ -0.48
CLK3-205ENST00000561673 CLTBP09497 229 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 SMPD1P17405 629 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 PTGS1P23219 599 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 ITGB8P26012 769 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 NKX3-2P78367 333 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 TMEM63BQ5T3F8 832 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 TAPT1Q6NXT6 567 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 EEPD1Q7L9B9 569 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 ANKRD33Q7Z3H0 272 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 FBXO16Q8IX29 292 aaPredicted RBP12.05□□□□□ -0.48
CLK3-205ENST00000561673 PCSK9Q8NBP7 692 aaKnown RBP12.05□□□□□ -0.48
CLK3-205ENST00000561673 MORC4Q8TE76 937 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 RUFY2Q8WXA3 655 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 PNMA2Q9UL42 364 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 GNEQ9Y223 722 aaKnown RBP12.05□□□□□ -0.48
CLK3-205ENST00000561673 TNKSO95271 1327 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 RAD50Q92878 1312 aa12.05□□□□□ -0.48
CLK3-205ENST00000561673 DYNC1LI2O43237 492 aaPredicted RBP12.04□□□□□ -0.48
CLK3-205ENST00000561673 CALML3P27482 149 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 CDK7P50613 346 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 ALDH5A1P51649 535 aaPredicted RBP12.04□□□□□ -0.48
CLK3-205ENST00000561673 BEX3Q00994 111 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 FAAP100Q0VG06 881 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 IQSEC1Q6DN90 963 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 GPR153Q6NV75 609 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 SLC30A10Q6XR72 485 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 RNF207Q6ZRF8 634 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 CYB5R4Q7L1T6 521 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 ADGRF4Q8IZF3 695 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 VTI1AQ96AJ9 217 aa12.04□□□□□ -0.48
CLK3-205ENST00000561673 GLT1D1Q96MS3 346 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms